Strain Fitness in Escherichia coli BL21 around ECD_03550

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03549 and ECD_03550 are separated by 45 nucleotidesECD_03550 and ECD_03551 are separated by 137 nucleotides ECD_03549: ECD_03549 - cryptic adenine deaminase, at 3,732,331 to 3,734,097 _03549 ECD_03550: ECD_03550 - hexose phosphate transporter, at 3,734,143 to 3,735,534 _03550 ECD_03551: ECD_03551 - membrane protein regulates uhpT expression, at 3,735,672 to 3,736,991 _03551 Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3733.229 kb on + strand, within ECD_03549at 3733.331 kb on + strand, within ECD_03549at 3733.331 kb on + strand, within ECD_03549at 3733.332 kb on - strand, within ECD_03549at 3733.380 kb on + strand, within ECD_03549at 3733.401 kb on - strand, within ECD_03549at 3733.437 kb on - strand, within ECD_03549at 3733.480 kb on + strand, within ECD_03549at 3733.609 kb on + strand, within ECD_03549at 3733.647 kb on + strand, within ECD_03549at 3733.647 kb on + strand, within ECD_03549at 3733.648 kb on - strand, within ECD_03549at 3733.759 kb on - strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.762 kb on - strand, within ECD_03549at 3733.762 kb on - strand, within ECD_03549at 3733.859 kb on + strand, within ECD_03549at 3733.859 kb on + strand, within ECD_03549at 3734.034 kb on - strandat 3734.139 kb on - strandat 3734.139 kb on - strandat 3734.226 kb on + strandat 3734.227 kb on - strandat 3734.227 kb on - strandat 3734.227 kb on - strandat 3734.321 kb on - strand, within ECD_03550at 3734.348 kb on + strand, within ECD_03550at 3734.364 kb on + strand, within ECD_03550at 3734.365 kb on - strand, within ECD_03550at 3734.368 kb on - strand, within ECD_03550at 3734.394 kb on + strand, within ECD_03550at 3734.395 kb on - strand, within ECD_03550at 3734.398 kb on + strand, within ECD_03550at 3734.477 kb on + strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.490 kb on + strand, within ECD_03550at 3734.504 kb on + strand, within ECD_03550at 3734.504 kb on + strand, within ECD_03550at 3734.505 kb on - strand, within ECD_03550at 3734.505 kb on - strand, within ECD_03550at 3734.632 kb on - strand, within ECD_03550at 3734.632 kb on - strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.714 kb on - strand, within ECD_03550at 3734.714 kb on - strand, within ECD_03550at 3734.721 kb on - strand, within ECD_03550at 3734.721 kb on - strand, within ECD_03550at 3734.774 kb on + strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.802 kb on + strand, within ECD_03550at 3734.808 kb on + strand, within ECD_03550at 3734.949 kb on + strand, within ECD_03550at 3734.950 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3735.040 kb on - strand, within ECD_03550at 3735.040 kb on - strand, within ECD_03550at 3735.101 kb on + strand, within ECD_03550at 3735.139 kb on + strand, within ECD_03550at 3735.146 kb on + strand, within ECD_03550at 3735.146 kb on + strand, within ECD_03550at 3735.146 kb on + strand, within ECD_03550at 3735.210 kb on + strand, within ECD_03550at 3735.211 kb on - strand, within ECD_03550at 3735.216 kb on + strand, within ECD_03550at 3735.217 kb on - strand, within ECD_03550at 3735.217 kb on - strand, within ECD_03550at 3735.272 kb on + strand, within ECD_03550at 3735.275 kb on + strand, within ECD_03550at 3735.276 kb on - strand, within ECD_03550at 3735.291 kb on + strand, within ECD_03550at 3735.303 kb on - strand, within ECD_03550at 3735.356 kb on + strand, within ECD_03550at 3735.370 kb on - strand, within ECD_03550at 3735.388 kb on - strand, within ECD_03550at 3735.407 kb on + strandat 3735.407 kb on + strandat 3735.441 kb on - strandat 3735.577 kb on - strandat 3735.746 kb on + strandat 3735.747 kb on - strandat 3735.783 kb on + strandat 3735.784 kb on - strandat 3735.901 kb on - strand, within ECD_03551at 3735.962 kb on - strand, within ECD_03551at 3735.962 kb on - strand, within ECD_03551at 3735.962 kb on - strand, within ECD_03551at 3735.962 kb on - strand, within ECD_03551at 3735.962 kb on - strand, within ECD_03551at 3736.163 kb on + strand, within ECD_03551at 3736.163 kb on + strand, within ECD_03551at 3736.164 kb on - strand, within ECD_03551at 3736.164 kb on - strand, within ECD_03551at 3736.165 kb on + strand, within ECD_03551at 3736.165 kb on + strand, within ECD_03551at 3736.165 kb on + strand, within ECD_03551at 3736.166 kb on - strand, within ECD_03551at 3736.166 kb on - strand, within ECD_03551at 3736.166 kb on - strand, within ECD_03551at 3736.166 kb on - strand, within ECD_03551at 3736.166 kb on - strand, within ECD_03551at 3736.204 kb on + strand, within ECD_03551at 3736.204 kb on + strand, within ECD_03551at 3736.204 kb on + strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.205 kb on - strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.216 kb on + strand, within ECD_03551at 3736.217 kb on - strand, within ECD_03551at 3736.217 kb on - strand, within ECD_03551at 3736.217 kb on - strand, within ECD_03551at 3736.217 kb on - strand, within ECD_03551at 3736.239 kb on - strand, within ECD_03551at 3736.239 kb on - strand, within ECD_03551at 3736.239 kb on - strand, within ECD_03551at 3736.240 kb on + strand, within ECD_03551at 3736.240 kb on + strand, within ECD_03551at 3736.258 kb on + strand, within ECD_03551at 3736.259 kb on - strand, within ECD_03551at 3736.259 kb on - strand, within ECD_03551at 3736.259 kb on - strand, within ECD_03551at 3736.259 kb on - strand, within ECD_03551at 3736.451 kb on - strand, within ECD_03551at 3736.455 kb on + strand, within ECD_03551at 3736.455 kb on + strand, within ECD_03551at 3736.456 kb on - strand, within ECD_03551at 3736.456 kb on - strand, within ECD_03551at 3736.519 kb on - strand, within ECD_03551

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,733,229 + ECD_03549 0.51 -1.8
3,733,331 + ECD_03549 0.57 -0.4
3,733,331 + ECD_03549 0.57 +4.1
3,733,332 - ECD_03549 0.57 -0.2
3,733,380 + ECD_03549 0.59 -0.5
3,733,401 - ECD_03549 0.61 -0.3
3,733,437 - ECD_03549 0.63 +0.8
3,733,480 + ECD_03549 0.65 +0.1
3,733,609 + ECD_03549 0.72 +0.0
3,733,647 + ECD_03549 0.74 +0.9
3,733,647 + ECD_03549 0.74 +0.5
3,733,648 - ECD_03549 0.75 -0.9
3,733,759 - ECD_03549 0.81 +0.7
3,733,761 + ECD_03549 0.81 -0.8
3,733,761 + ECD_03549 0.81 +0.2
3,733,761 + ECD_03549 0.81 +3.8
3,733,762 - ECD_03549 0.81 +0.3
3,733,762 - ECD_03549 0.81 -0.4
3,733,859 + ECD_03549 0.86 -0.5
3,733,859 + ECD_03549 0.86 -0.4
3,734,034 - -0.2
3,734,139 - +3.3
3,734,139 - +1.1
3,734,226 + +0.3
3,734,227 - +3.3
3,734,227 - +3.4
3,734,227 - +3.5
3,734,321 - ECD_03550 0.13 +4.4
3,734,348 + ECD_03550 0.15 -0.8
3,734,364 + ECD_03550 0.16 +1.7
3,734,365 - ECD_03550 0.16 +6.3
3,734,368 - ECD_03550 0.16 +3.8
3,734,394 + ECD_03550 0.18 +0.3
3,734,395 - ECD_03550 0.18 +3.6
3,734,398 + ECD_03550 0.18 +0.2
3,734,477 + ECD_03550 0.24 +0.0
3,734,478 - ECD_03550 0.24 +4.1
3,734,478 - ECD_03550 0.24 +4.7
3,734,478 - ECD_03550 0.24 +4.8
3,734,478 - ECD_03550 0.24 +4.2
3,734,478 - ECD_03550 0.24 +4.4
3,734,481 + ECD_03550 0.24 -0.1
3,734,481 + ECD_03550 0.24 +1.4
3,734,481 + ECD_03550 0.24 -0.0
3,734,481 + ECD_03550 0.24 +0.2
3,734,481 + ECD_03550 0.24 +0.9
3,734,482 - ECD_03550 0.24 +3.8
3,734,482 - ECD_03550 0.24 +4.0
3,734,482 - ECD_03550 0.24 +4.5
3,734,482 - ECD_03550 0.24 +4.4
3,734,482 - ECD_03550 0.24 +5.2
3,734,483 + ECD_03550 0.24 -0.0
3,734,483 + ECD_03550 0.24 +0.0
3,734,483 + ECD_03550 0.24 +1.0
3,734,484 - ECD_03550 0.24 +3.5
3,734,484 - ECD_03550 0.24 +3.8
3,734,484 - ECD_03550 0.24 +4.0
3,734,490 + ECD_03550 0.25 -0.5
3,734,504 + ECD_03550 0.26 +2.0
3,734,504 + ECD_03550 0.26 -0.7
3,734,505 - ECD_03550 0.26 +4.2
3,734,505 - ECD_03550 0.26 +4.4
3,734,632 - ECD_03550 0.35 +5.0
3,734,632 - ECD_03550 0.35 +3.9
3,734,709 + ECD_03550 0.41 -0.1
3,734,709 + ECD_03550 0.41 -0.5
3,734,709 + ECD_03550 0.41 +0.4
3,734,710 - ECD_03550 0.41 +2.5
3,734,710 - ECD_03550 0.41 +3.9
3,734,710 - ECD_03550 0.41 +3.0
3,734,710 - ECD_03550 0.41 +3.3
3,734,714 - ECD_03550 0.41 +4.4
3,734,714 - ECD_03550 0.41 +4.9
3,734,721 - ECD_03550 0.42 +4.3
3,734,721 - ECD_03550 0.42 +3.9
3,734,774 + ECD_03550 0.45 -1.1
3,734,775 - ECD_03550 0.45 +3.0
3,734,775 - ECD_03550 0.45 +3.0
3,734,775 - ECD_03550 0.45 +3.1
3,734,775 - ECD_03550 0.45 +2.5
3,734,775 - ECD_03550 0.45 +4.1
3,734,802 + ECD_03550 0.47 +0.2
3,734,808 + ECD_03550 0.48 -0.3
3,734,949 + ECD_03550 0.58 +1.7
3,734,950 - ECD_03550 0.58 +1.1
3,734,982 - ECD_03550 0.60 +1.8
3,734,982 - ECD_03550 0.60 +1.0
3,734,982 - ECD_03550 0.60 +0.6
3,735,040 - ECD_03550 0.64 +1.3
3,735,040 - ECD_03550 0.64 +2.4
3,735,101 + ECD_03550 0.69 +0.1
3,735,139 + ECD_03550 0.72 +0.5
3,735,146 + ECD_03550 0.72 -0.6
3,735,146 + ECD_03550 0.72 -1.0
3,735,146 + ECD_03550 0.72 +1.0
3,735,210 + ECD_03550 0.77 +0.2
3,735,211 - ECD_03550 0.77 +0.2
3,735,216 + ECD_03550 0.77 +0.3
3,735,217 - ECD_03550 0.77 +0.4
3,735,217 - ECD_03550 0.77 +2.0
3,735,272 + ECD_03550 0.81 +0.4
3,735,275 + ECD_03550 0.81 +0.6
3,735,276 - ECD_03550 0.81 +1.2
3,735,291 + ECD_03550 0.82 +0.7
3,735,303 - ECD_03550 0.83 +0.3
3,735,356 + ECD_03550 0.87 +0.6
3,735,370 - ECD_03550 0.88 +2.2
3,735,388 - ECD_03550 0.89 +1.5
3,735,407 + -0.4
3,735,407 + -0.9
3,735,441 - +1.6
3,735,577 - +2.3
3,735,746 + +0.4
3,735,747 - -0.1
3,735,783 + +0.2
3,735,784 - +0.4
3,735,901 - ECD_03551 0.17 +0.8
3,735,962 - ECD_03551 0.22 -1.0
3,735,962 - ECD_03551 0.22 +0.0
3,735,962 - ECD_03551 0.22 -0.4
3,735,962 - ECD_03551 0.22 +0.7
3,735,962 - ECD_03551 0.22 -0.3
3,736,163 + ECD_03551 0.37 -0.0
3,736,163 + ECD_03551 0.37 +0.7
3,736,164 - ECD_03551 0.37 -0.4
3,736,164 - ECD_03551 0.37 -0.0
3,736,165 + ECD_03551 0.37 -0.4
3,736,165 + ECD_03551 0.37 +0.3
3,736,165 + ECD_03551 0.37 +0.4
3,736,166 - ECD_03551 0.37 -1.8
3,736,166 - ECD_03551 0.37 +0.7
3,736,166 - ECD_03551 0.37 +0.8
3,736,166 - ECD_03551 0.37 -0.1
3,736,166 - ECD_03551 0.37 +0.3
3,736,204 + ECD_03551 0.40 -0.3
3,736,204 + ECD_03551 0.40 -0.6
3,736,204 + ECD_03551 0.40 +0.6
3,736,205 - ECD_03551 0.40 -1.0
3,736,205 - ECD_03551 0.40 +1.9
3,736,205 - ECD_03551 0.40 -0.1
3,736,205 - ECD_03551 0.40 -0.6
3,736,205 - ECD_03551 0.40 +0.2
3,736,205 - ECD_03551 0.40 +1.2
3,736,205 - ECD_03551 0.40 +0.2
3,736,216 + ECD_03551 0.41 -1.1
3,736,216 + ECD_03551 0.41 -0.0
3,736,216 + ECD_03551 0.41 -1.1
3,736,216 + ECD_03551 0.41 +1.3
3,736,216 + ECD_03551 0.41 -2.3
3,736,216 + ECD_03551 0.41 -0.5
3,736,217 - ECD_03551 0.41 +0.4
3,736,217 - ECD_03551 0.41 +0.4
3,736,217 - ECD_03551 0.41 +0.3
3,736,217 - ECD_03551 0.41 -0.5
3,736,239 - ECD_03551 0.43 +0.6
3,736,239 - ECD_03551 0.43 +0.4
3,736,239 - ECD_03551 0.43 +1.0
3,736,240 + ECD_03551 0.43 -1.0
3,736,240 + ECD_03551 0.43 +0.1
3,736,258 + ECD_03551 0.44 +0.1
3,736,259 - ECD_03551 0.44 +0.1
3,736,259 - ECD_03551 0.44 +0.4
3,736,259 - ECD_03551 0.44 -0.7
3,736,259 - ECD_03551 0.44 -0.2
3,736,451 - ECD_03551 0.59 -0.0
3,736,455 + ECD_03551 0.59 +0.2
3,736,455 + ECD_03551 0.59 -0.8
3,736,456 - ECD_03551 0.59 +1.4
3,736,456 - ECD_03551 0.59 -0.2
3,736,519 - ECD_03551 0.64 +1.1

Or see this region's nucleotide sequence