Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03549 and ECD_03550 are separated by 45 nucleotides ECD_03550 and ECD_03551 are separated by 137 nucleotides
ECD_03549: ECD_03549 - cryptic adenine deaminase, at 3,732,331 to 3,734,097
_03549
ECD_03550: ECD_03550 - hexose phosphate transporter, at 3,734,143 to 3,735,534
_03550
ECD_03551: ECD_03551 - membrane protein regulates uhpT expression, at 3,735,672 to 3,736,991
_03551
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3733.229 kb on + strand, within ECD_03549 at 3733.331 kb on + strand, within ECD_03549 at 3733.331 kb on + strand, within ECD_03549 at 3733.332 kb on - strand, within ECD_03549 at 3733.380 kb on + strand, within ECD_03549 at 3733.401 kb on - strand, within ECD_03549 at 3733.437 kb on - strand, within ECD_03549 at 3733.480 kb on + strand, within ECD_03549 at 3733.609 kb on + strand, within ECD_03549 at 3733.647 kb on + strand, within ECD_03549 at 3733.647 kb on + strand, within ECD_03549 at 3733.648 kb on - strand, within ECD_03549 at 3733.759 kb on - strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.762 kb on - strand, within ECD_03549 at 3733.762 kb on - strand, within ECD_03549 at 3733.859 kb on + strand, within ECD_03549 at 3733.859 kb on + strand, within ECD_03549 at 3734.034 kb on - strand at 3734.139 kb on - strand at 3734.139 kb on - strand at 3734.226 kb on + strand at 3734.227 kb on - strand at 3734.227 kb on - strand at 3734.227 kb on - strand at 3734.321 kb on - strand, within ECD_03550 at 3734.348 kb on + strand, within ECD_03550 at 3734.364 kb on + strand, within ECD_03550 at 3734.365 kb on - strand, within ECD_03550 at 3734.368 kb on - strand, within ECD_03550 at 3734.394 kb on + strand, within ECD_03550 at 3734.395 kb on - strand, within ECD_03550 at 3734.398 kb on + strand, within ECD_03550 at 3734.477 kb on + strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.490 kb on + strand, within ECD_03550 at 3734.504 kb on + strand, within ECD_03550 at 3734.504 kb on + strand, within ECD_03550 at 3734.505 kb on - strand, within ECD_03550 at 3734.505 kb on - strand, within ECD_03550 at 3734.632 kb on - strand, within ECD_03550 at 3734.632 kb on - strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.714 kb on - strand, within ECD_03550 at 3734.714 kb on - strand, within ECD_03550 at 3734.721 kb on - strand, within ECD_03550 at 3734.721 kb on - strand, within ECD_03550 at 3734.774 kb on + strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.802 kb on + strand, within ECD_03550 at 3734.808 kb on + strand, within ECD_03550 at 3734.949 kb on + strand, within ECD_03550 at 3734.950 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3735.040 kb on - strand, within ECD_03550 at 3735.040 kb on - strand, within ECD_03550 at 3735.101 kb on + strand, within ECD_03550 at 3735.139 kb on + strand, within ECD_03550 at 3735.146 kb on + strand, within ECD_03550 at 3735.146 kb on + strand, within ECD_03550 at 3735.146 kb on + strand, within ECD_03550 at 3735.210 kb on + strand, within ECD_03550 at 3735.211 kb on - strand, within ECD_03550 at 3735.216 kb on + strand, within ECD_03550 at 3735.217 kb on - strand, within ECD_03550 at 3735.217 kb on - strand, within ECD_03550 at 3735.272 kb on + strand, within ECD_03550 at 3735.275 kb on + strand, within ECD_03550 at 3735.276 kb on - strand, within ECD_03550 at 3735.291 kb on + strand, within ECD_03550 at 3735.303 kb on - strand, within ECD_03550 at 3735.356 kb on + strand, within ECD_03550 at 3735.370 kb on - strand, within ECD_03550 at 3735.388 kb on - strand, within ECD_03550 at 3735.407 kb on + strand at 3735.407 kb on + strand at 3735.441 kb on - strand at 3735.577 kb on - strand at 3735.746 kb on + strand at 3735.747 kb on - strand at 3735.783 kb on + strand at 3735.784 kb on - strand at 3735.901 kb on - strand, within ECD_03551 at 3735.962 kb on - strand, within ECD_03551 at 3735.962 kb on - strand, within ECD_03551 at 3735.962 kb on - strand, within ECD_03551 at 3735.962 kb on - strand, within ECD_03551 at 3735.962 kb on - strand, within ECD_03551 at 3736.163 kb on + strand, within ECD_03551 at 3736.163 kb on + strand, within ECD_03551 at 3736.164 kb on - strand, within ECD_03551 at 3736.164 kb on - strand, within ECD_03551 at 3736.165 kb on + strand, within ECD_03551 at 3736.165 kb on + strand, within ECD_03551 at 3736.165 kb on + strand, within ECD_03551 at 3736.166 kb on - strand, within ECD_03551 at 3736.166 kb on - strand, within ECD_03551 at 3736.166 kb on - strand, within ECD_03551 at 3736.166 kb on - strand, within ECD_03551 at 3736.166 kb on - strand, within ECD_03551 at 3736.204 kb on + strand, within ECD_03551 at 3736.204 kb on + strand, within ECD_03551 at 3736.204 kb on + strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.205 kb on - strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.216 kb on + strand, within ECD_03551 at 3736.217 kb on - strand, within ECD_03551 at 3736.217 kb on - strand, within ECD_03551 at 3736.217 kb on - strand, within ECD_03551 at 3736.217 kb on - strand, within ECD_03551 at 3736.239 kb on - strand, within ECD_03551 at 3736.239 kb on - strand, within ECD_03551 at 3736.239 kb on - strand, within ECD_03551 at 3736.240 kb on + strand, within ECD_03551 at 3736.240 kb on + strand, within ECD_03551 at 3736.258 kb on + strand, within ECD_03551 at 3736.259 kb on - strand, within ECD_03551 at 3736.259 kb on - strand, within ECD_03551 at 3736.259 kb on - strand, within ECD_03551 at 3736.259 kb on - strand, within ECD_03551 at 3736.451 kb on - strand, within ECD_03551 at 3736.455 kb on + strand, within ECD_03551 at 3736.455 kb on + strand, within ECD_03551 at 3736.456 kb on - strand, within ECD_03551 at 3736.456 kb on - strand, within ECD_03551 at 3736.519 kb on - strand, within ECD_03551
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,733,229 + ECD_03549 0.51 -1.8 3,733,331 + ECD_03549 0.57 -0.4 3,733,331 + ECD_03549 0.57 +4.1 3,733,332 - ECD_03549 0.57 -0.2 3,733,380 + ECD_03549 0.59 -0.5 3,733,401 - ECD_03549 0.61 -0.3 3,733,437 - ECD_03549 0.63 +0.8 3,733,480 + ECD_03549 0.65 +0.1 3,733,609 + ECD_03549 0.72 +0.0 3,733,647 + ECD_03549 0.74 +0.9 3,733,647 + ECD_03549 0.74 +0.5 3,733,648 - ECD_03549 0.75 -0.9 3,733,759 - ECD_03549 0.81 +0.7 3,733,761 + ECD_03549 0.81 -0.8 3,733,761 + ECD_03549 0.81 +0.2 3,733,761 + ECD_03549 0.81 +3.8 3,733,762 - ECD_03549 0.81 +0.3 3,733,762 - ECD_03549 0.81 -0.4 3,733,859 + ECD_03549 0.86 -0.5 3,733,859 + ECD_03549 0.86 -0.4 3,734,034 - -0.2 3,734,139 - +3.3 3,734,139 - +1.1 3,734,226 + +0.3 3,734,227 - +3.3 3,734,227 - +3.4 3,734,227 - +3.5 3,734,321 - ECD_03550 0.13 +4.4 3,734,348 + ECD_03550 0.15 -0.8 3,734,364 + ECD_03550 0.16 +1.7 3,734,365 - ECD_03550 0.16 +6.3 3,734,368 - ECD_03550 0.16 +3.8 3,734,394 + ECD_03550 0.18 +0.3 3,734,395 - ECD_03550 0.18 +3.6 3,734,398 + ECD_03550 0.18 +0.2 3,734,477 + ECD_03550 0.24 +0.0 3,734,478 - ECD_03550 0.24 +4.1 3,734,478 - ECD_03550 0.24 +4.7 3,734,478 - ECD_03550 0.24 +4.8 3,734,478 - ECD_03550 0.24 +4.2 3,734,478 - ECD_03550 0.24 +4.4 3,734,481 + ECD_03550 0.24 -0.1 3,734,481 + ECD_03550 0.24 +1.4 3,734,481 + ECD_03550 0.24 -0.0 3,734,481 + ECD_03550 0.24 +0.2 3,734,481 + ECD_03550 0.24 +0.9 3,734,482 - ECD_03550 0.24 +3.8 3,734,482 - ECD_03550 0.24 +4.0 3,734,482 - ECD_03550 0.24 +4.5 3,734,482 - ECD_03550 0.24 +4.4 3,734,482 - ECD_03550 0.24 +5.2 3,734,483 + ECD_03550 0.24 -0.0 3,734,483 + ECD_03550 0.24 +0.0 3,734,483 + ECD_03550 0.24 +1.0 3,734,484 - ECD_03550 0.24 +3.5 3,734,484 - ECD_03550 0.24 +3.8 3,734,484 - ECD_03550 0.24 +4.0 3,734,490 + ECD_03550 0.25 -0.5 3,734,504 + ECD_03550 0.26 +2.0 3,734,504 + ECD_03550 0.26 -0.7 3,734,505 - ECD_03550 0.26 +4.2 3,734,505 - ECD_03550 0.26 +4.4 3,734,632 - ECD_03550 0.35 +5.0 3,734,632 - ECD_03550 0.35 +3.9 3,734,709 + ECD_03550 0.41 -0.1 3,734,709 + ECD_03550 0.41 -0.5 3,734,709 + ECD_03550 0.41 +0.4 3,734,710 - ECD_03550 0.41 +2.5 3,734,710 - ECD_03550 0.41 +3.9 3,734,710 - ECD_03550 0.41 +3.0 3,734,710 - ECD_03550 0.41 +3.3 3,734,714 - ECD_03550 0.41 +4.4 3,734,714 - ECD_03550 0.41 +4.9 3,734,721 - ECD_03550 0.42 +4.3 3,734,721 - ECD_03550 0.42 +3.9 3,734,774 + ECD_03550 0.45 -1.1 3,734,775 - ECD_03550 0.45 +3.0 3,734,775 - ECD_03550 0.45 +3.0 3,734,775 - ECD_03550 0.45 +3.1 3,734,775 - ECD_03550 0.45 +2.5 3,734,775 - ECD_03550 0.45 +4.1 3,734,802 + ECD_03550 0.47 +0.2 3,734,808 + ECD_03550 0.48 -0.3 3,734,949 + ECD_03550 0.58 +1.7 3,734,950 - ECD_03550 0.58 +1.1 3,734,982 - ECD_03550 0.60 +1.8 3,734,982 - ECD_03550 0.60 +1.0 3,734,982 - ECD_03550 0.60 +0.6 3,735,040 - ECD_03550 0.64 +1.3 3,735,040 - ECD_03550 0.64 +2.4 3,735,101 + ECD_03550 0.69 +0.1 3,735,139 + ECD_03550 0.72 +0.5 3,735,146 + ECD_03550 0.72 -0.6 3,735,146 + ECD_03550 0.72 -1.0 3,735,146 + ECD_03550 0.72 +1.0 3,735,210 + ECD_03550 0.77 +0.2 3,735,211 - ECD_03550 0.77 +0.2 3,735,216 + ECD_03550 0.77 +0.3 3,735,217 - ECD_03550 0.77 +0.4 3,735,217 - ECD_03550 0.77 +2.0 3,735,272 + ECD_03550 0.81 +0.4 3,735,275 + ECD_03550 0.81 +0.6 3,735,276 - ECD_03550 0.81 +1.2 3,735,291 + ECD_03550 0.82 +0.7 3,735,303 - ECD_03550 0.83 +0.3 3,735,356 + ECD_03550 0.87 +0.6 3,735,370 - ECD_03550 0.88 +2.2 3,735,388 - ECD_03550 0.89 +1.5 3,735,407 + -0.4 3,735,407 + -0.9 3,735,441 - +1.6 3,735,577 - +2.3 3,735,746 + +0.4 3,735,747 - -0.1 3,735,783 + +0.2 3,735,784 - +0.4 3,735,901 - ECD_03551 0.17 +0.8 3,735,962 - ECD_03551 0.22 -1.0 3,735,962 - ECD_03551 0.22 +0.0 3,735,962 - ECD_03551 0.22 -0.4 3,735,962 - ECD_03551 0.22 +0.7 3,735,962 - ECD_03551 0.22 -0.3 3,736,163 + ECD_03551 0.37 -0.0 3,736,163 + ECD_03551 0.37 +0.7 3,736,164 - ECD_03551 0.37 -0.4 3,736,164 - ECD_03551 0.37 -0.0 3,736,165 + ECD_03551 0.37 -0.4 3,736,165 + ECD_03551 0.37 +0.3 3,736,165 + ECD_03551 0.37 +0.4 3,736,166 - ECD_03551 0.37 -1.8 3,736,166 - ECD_03551 0.37 +0.7 3,736,166 - ECD_03551 0.37 +0.8 3,736,166 - ECD_03551 0.37 -0.1 3,736,166 - ECD_03551 0.37 +0.3 3,736,204 + ECD_03551 0.40 -0.3 3,736,204 + ECD_03551 0.40 -0.6 3,736,204 + ECD_03551 0.40 +0.6 3,736,205 - ECD_03551 0.40 -1.0 3,736,205 - ECD_03551 0.40 +1.9 3,736,205 - ECD_03551 0.40 -0.1 3,736,205 - ECD_03551 0.40 -0.6 3,736,205 - ECD_03551 0.40 +0.2 3,736,205 - ECD_03551 0.40 +1.2 3,736,205 - ECD_03551 0.40 +0.2 3,736,216 + ECD_03551 0.41 -1.1 3,736,216 + ECD_03551 0.41 -0.0 3,736,216 + ECD_03551 0.41 -1.1 3,736,216 + ECD_03551 0.41 +1.3 3,736,216 + ECD_03551 0.41 -2.3 3,736,216 + ECD_03551 0.41 -0.5 3,736,217 - ECD_03551 0.41 +0.4 3,736,217 - ECD_03551 0.41 +0.4 3,736,217 - ECD_03551 0.41 +0.3 3,736,217 - ECD_03551 0.41 -0.5 3,736,239 - ECD_03551 0.43 +0.6 3,736,239 - ECD_03551 0.43 +0.4 3,736,239 - ECD_03551 0.43 +1.0 3,736,240 + ECD_03551 0.43 -1.0 3,736,240 + ECD_03551 0.43 +0.1 3,736,258 + ECD_03551 0.44 +0.1 3,736,259 - ECD_03551 0.44 +0.1 3,736,259 - ECD_03551 0.44 +0.4 3,736,259 - ECD_03551 0.44 -0.7 3,736,259 - ECD_03551 0.44 -0.2 3,736,451 - ECD_03551 0.59 -0.0 3,736,455 + ECD_03551 0.59 +0.2 3,736,455 + ECD_03551 0.59 -0.8 3,736,456 - ECD_03551 0.59 +1.4 3,736,456 - ECD_03551 0.59 -0.2 3,736,519 - ECD_03551 0.64 +1.1
Or see this region's nucleotide sequence