Strain Fitness in Escherichia coli BL21 around ECD_03478

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03477 and ECD_03478 are separated by 3 nucleotidesECD_03478 and ECD_03479 are separated by 69 nucleotides ECD_03477: ECD_03477 - ADP-heptose:LPS heptosyltransferase II, at 3,662,908 to 3,663,954 _03477 ECD_03478: ECD_03478 - ADP-heptose:LPS heptosyl transferase I, at 3,663,958 to 3,664,938 _03478 ECD_03479: ECD_03479 - Lipid A-core, surface polymer ligase, at 3,665,008 to 3,666,261 _03479 Position (kb) 3663 3664 3665Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3663.266 kb on + strand, within ECD_03477at 3663.511 kb on + strand, within ECD_03477at 3664.348 kb on - strand, within ECD_03478at 3665.119 kb on + strandat 3665.188 kb on + strand, within ECD_03479at 3665.221 kb on + strand, within ECD_03479at 3665.285 kb on - strand, within ECD_03479at 3665.656 kb on + strand, within ECD_03479at 3665.657 kb on - strand, within ECD_03479at 3665.680 kb on - strand, within ECD_03479at 3665.786 kb on - strand, within ECD_03479

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,663,266 + ECD_03477 0.34 +5.1
3,663,511 + ECD_03477 0.58 +2.4
3,664,348 - ECD_03478 0.40 +3.0
3,665,119 + +0.7
3,665,188 + ECD_03479 0.14 -0.6
3,665,221 + ECD_03479 0.17 -1.4
3,665,285 - ECD_03479 0.22 -0.0
3,665,656 + ECD_03479 0.52 +0.5
3,665,657 - ECD_03479 0.52 +0.4
3,665,680 - ECD_03479 0.54 +0.0
3,665,786 - ECD_03479 0.62 +0.2

Or see this region's nucleotide sequence