Strain Fitness in Escherichia coli BL21 around ECD_03445

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03444 and ECD_03445 are separated by 189 nucleotidesECD_03445 and ECD_03446 overlap by 4 nucleotides ECD_03444: ECD_03444 - L-threonine dehydrogenase, at 3,623,065 to 3,624,216 _03444 ECD_03445: ECD_03445 - selenocysteinyl-tRNA-specific translation factor, at 3,624,406 to 3,626,250 _03445 ECD_03446: ECD_03446 - selenocysteine synthase, at 3,626,247 to 3,627,638 _03446 Position (kb) 3624 3625 3626 3627Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3623.436 kb on - strand, within ECD_03444at 3623.483 kb on + strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.511 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.671 kb on - strand, within ECD_03444at 3623.721 kb on + strand, within ECD_03444at 3623.722 kb on - strand, within ECD_03444at 3624.083 kb on - strand, within ECD_03444at 3624.112 kb on + strandat 3624.217 kb on - strandat 3624.235 kb on + strandat 3624.585 kb on + strandat 3624.617 kb on + strand, within ECD_03445at 3624.618 kb on - strand, within ECD_03445at 3624.647 kb on - strand, within ECD_03445at 3624.812 kb on - strand, within ECD_03445at 3624.962 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.027 kb on - strand, within ECD_03445at 3625.027 kb on - strand, within ECD_03445at 3625.029 kb on - strand, within ECD_03445at 3625.041 kb on + strand, within ECD_03445at 3625.042 kb on - strand, within ECD_03445at 3625.043 kb on + strand, within ECD_03445at 3625.044 kb on - strand, within ECD_03445at 3625.044 kb on - strand, within ECD_03445at 3625.197 kb on - strand, within ECD_03445at 3625.288 kb on + strand, within ECD_03445at 3625.396 kb on - strand, within ECD_03445at 3625.396 kb on - strand, within ECD_03445at 3625.501 kb on - strand, within ECD_03445at 3625.533 kb on + strand, within ECD_03445at 3625.533 kb on + strand, within ECD_03445at 3625.534 kb on - strand, within ECD_03445at 3625.534 kb on - strand, within ECD_03445at 3625.542 kb on + strand, within ECD_03445at 3625.598 kb on - strand, within ECD_03445at 3625.615 kb on + strand, within ECD_03445at 3625.696 kb on + strand, within ECD_03445at 3625.696 kb on + strand, within ECD_03445at 3625.697 kb on - strand, within ECD_03445at 3625.731 kb on + strand, within ECD_03445at 3625.731 kb on + strand, within ECD_03445at 3625.731 kb on + strand, within ECD_03445at 3625.732 kb on - strand, within ECD_03445at 3625.732 kb on - strand, within ECD_03445at 3625.845 kb on - strand, within ECD_03445at 3626.121 kb on - strandat 3626.245 kb on - strandat 3626.296 kb on - strandat 3626.320 kb on + strandat 3626.321 kb on - strandat 3626.324 kb on + strandat 3626.324 kb on + strandat 3626.406 kb on - strand, within ECD_03446at 3626.412 kb on + strand, within ECD_03446at 3626.477 kb on + strand, within ECD_03446at 3626.478 kb on - strand, within ECD_03446at 3626.478 kb on - strand, within ECD_03446at 3626.504 kb on - strand, within ECD_03446at 3626.527 kb on - strand, within ECD_03446at 3626.527 kb on - strand, within ECD_03446at 3626.617 kb on + strand, within ECD_03446at 3626.727 kb on - strand, within ECD_03446at 3626.727 kb on - strand, within ECD_03446at 3626.727 kb on - strand, within ECD_03446at 3626.863 kb on - strand, within ECD_03446at 3626.875 kb on - strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.954 kb on + strand, within ECD_03446at 3626.955 kb on - strand, within ECD_03446at 3626.961 kb on - strand, within ECD_03446at 3626.964 kb on + strand, within ECD_03446at 3626.964 kb on + strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3627.007 kb on + strand, within ECD_03446at 3627.039 kb on + strand, within ECD_03446at 3627.049 kb on - strand, within ECD_03446at 3627.185 kb on + strand, within ECD_03446at 3627.186 kb on - strand, within ECD_03446at 3627.194 kb on + strand, within ECD_03446at 3627.215 kb on + strand, within ECD_03446

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,623,436 - ECD_03444 0.32 +0.5
3,623,483 + ECD_03444 0.36 +0.1
3,623,484 - ECD_03444 0.36 -1.1
3,623,484 - ECD_03444 0.36 +1.2
3,623,511 + ECD_03444 0.39 -0.4
3,623,609 + ECD_03444 0.47 -0.1
3,623,609 + ECD_03444 0.47 -0.8
3,623,610 - ECD_03444 0.47 -1.7
3,623,610 - ECD_03444 0.47 +1.2
3,623,610 - ECD_03444 0.47 -0.4
3,623,610 - ECD_03444 0.47 +0.1
3,623,671 - ECD_03444 0.53 +2.1
3,623,721 + ECD_03444 0.57 +0.1
3,623,722 - ECD_03444 0.57 +0.2
3,624,083 - ECD_03444 0.88 +0.5
3,624,112 + +1.3
3,624,217 - +4.5
3,624,235 + +1.2
3,624,585 + +0.2
3,624,617 + ECD_03445 0.11 -0.8
3,624,618 - ECD_03445 0.11 -1.3
3,624,647 - ECD_03445 0.13 +0.8
3,624,812 - ECD_03445 0.22 +0.2
3,624,962 + ECD_03445 0.30 -1.4
3,625,026 + ECD_03445 0.34 -0.2
3,625,026 + ECD_03445 0.34 +0.5
3,625,026 + ECD_03445 0.34 -0.1
3,625,026 + ECD_03445 0.34 -1.7
3,625,027 - ECD_03445 0.34 +0.2
3,625,027 - ECD_03445 0.34 -0.5
3,625,029 - ECD_03445 0.34 -1.4
3,625,041 + ECD_03445 0.34 +0.2
3,625,042 - ECD_03445 0.34 -0.3
3,625,043 + ECD_03445 0.35 -0.1
3,625,044 - ECD_03445 0.35 -0.0
3,625,044 - ECD_03445 0.35 +0.3
3,625,197 - ECD_03445 0.43 -0.7
3,625,288 + ECD_03445 0.48 -0.1
3,625,396 - ECD_03445 0.54 +0.1
3,625,396 - ECD_03445 0.54 +1.4
3,625,501 - ECD_03445 0.59 +0.2
3,625,533 + ECD_03445 0.61 +0.1
3,625,533 + ECD_03445 0.61 -1.0
3,625,534 - ECD_03445 0.61 +0.7
3,625,534 - ECD_03445 0.61 +0.9
3,625,542 + ECD_03445 0.62 -0.4
3,625,598 - ECD_03445 0.65 -1.4
3,625,615 + ECD_03445 0.66 -0.4
3,625,696 + ECD_03445 0.70 +0.6
3,625,696 + ECD_03445 0.70 -0.0
3,625,697 - ECD_03445 0.70 +0.5
3,625,731 + ECD_03445 0.72 -0.6
3,625,731 + ECD_03445 0.72 -1.4
3,625,731 + ECD_03445 0.72 -0.7
3,625,732 - ECD_03445 0.72 +0.9
3,625,732 - ECD_03445 0.72 +2.1
3,625,845 - ECD_03445 0.78 +0.3
3,626,121 - -0.8
3,626,245 - -0.1
3,626,296 - -1.8
3,626,320 + -0.3
3,626,321 - -1.1
3,626,324 + -1.1
3,626,324 + -0.5
3,626,406 - ECD_03446 0.11 -0.1
3,626,412 + ECD_03446 0.12 +0.0
3,626,477 + ECD_03446 0.17 -0.1
3,626,478 - ECD_03446 0.17 -0.4
3,626,478 - ECD_03446 0.17 -0.8
3,626,504 - ECD_03446 0.18 +0.0
3,626,527 - ECD_03446 0.20 -1.2
3,626,527 - ECD_03446 0.20 -0.2
3,626,617 + ECD_03446 0.27 -0.1
3,626,727 - ECD_03446 0.34 -0.5
3,626,727 - ECD_03446 0.34 -0.6
3,626,727 - ECD_03446 0.34 -0.3
3,626,863 - ECD_03446 0.44 +0.1
3,626,875 - ECD_03446 0.45 -0.1
3,626,950 + ECD_03446 0.51 -1.3
3,626,950 + ECD_03446 0.51 +0.3
3,626,950 + ECD_03446 0.51 -0.5
3,626,954 + ECD_03446 0.51 -3.2
3,626,955 - ECD_03446 0.51 -0.1
3,626,961 - ECD_03446 0.51 +0.5
3,626,964 + ECD_03446 0.52 -0.9
3,626,964 + ECD_03446 0.52 +0.6
3,626,965 - ECD_03446 0.52 -0.2
3,626,965 - ECD_03446 0.52 -0.1
3,626,965 - ECD_03446 0.52 -0.5
3,626,965 - ECD_03446 0.52 -0.6
3,627,007 + ECD_03446 0.55 -0.2
3,627,039 + ECD_03446 0.57 +0.2
3,627,049 - ECD_03446 0.58 -0.2
3,627,185 + ECD_03446 0.67 -0.1
3,627,186 - ECD_03446 0.67 -1.2
3,627,194 + ECD_03446 0.68 +0.4
3,627,215 + ECD_03446 0.70 +1.7

Or see this region's nucleotide sequence