Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03444 and ECD_03445 are separated by 189 nucleotides ECD_03445 and ECD_03446 overlap by 4 nucleotides
ECD_03444: ECD_03444 - L-threonine dehydrogenase, at 3,623,065 to 3,624,216
_03444
ECD_03445: ECD_03445 - selenocysteinyl-tRNA-specific translation factor, at 3,624,406 to 3,626,250
_03445
ECD_03446: ECD_03446 - selenocysteine synthase, at 3,626,247 to 3,627,638
_03446
Position (kb)
3624
3625
3626
3627 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3623.436 kb on - strand, within ECD_03444 at 3623.483 kb on + strand, within ECD_03444 at 3623.484 kb on - strand, within ECD_03444 at 3623.484 kb on - strand, within ECD_03444 at 3623.511 kb on + strand, within ECD_03444 at 3623.609 kb on + strand, within ECD_03444 at 3623.609 kb on + strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.671 kb on - strand, within ECD_03444 at 3623.721 kb on + strand, within ECD_03444 at 3623.722 kb on - strand, within ECD_03444 at 3624.083 kb on - strand, within ECD_03444 at 3624.112 kb on + strand at 3624.217 kb on - strand at 3624.235 kb on + strand at 3624.585 kb on + strand at 3624.617 kb on + strand, within ECD_03445 at 3624.618 kb on - strand, within ECD_03445 at 3624.647 kb on - strand, within ECD_03445 at 3624.812 kb on - strand, within ECD_03445 at 3624.962 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.027 kb on - strand, within ECD_03445 at 3625.027 kb on - strand, within ECD_03445 at 3625.029 kb on - strand, within ECD_03445 at 3625.041 kb on + strand, within ECD_03445 at 3625.042 kb on - strand, within ECD_03445 at 3625.043 kb on + strand, within ECD_03445 at 3625.044 kb on - strand, within ECD_03445 at 3625.044 kb on - strand, within ECD_03445 at 3625.197 kb on - strand, within ECD_03445 at 3625.288 kb on + strand, within ECD_03445 at 3625.396 kb on - strand, within ECD_03445 at 3625.396 kb on - strand, within ECD_03445 at 3625.501 kb on - strand, within ECD_03445 at 3625.533 kb on + strand, within ECD_03445 at 3625.533 kb on + strand, within ECD_03445 at 3625.534 kb on - strand, within ECD_03445 at 3625.534 kb on - strand, within ECD_03445 at 3625.542 kb on + strand, within ECD_03445 at 3625.598 kb on - strand, within ECD_03445 at 3625.615 kb on + strand, within ECD_03445 at 3625.696 kb on + strand, within ECD_03445 at 3625.696 kb on + strand, within ECD_03445 at 3625.697 kb on - strand, within ECD_03445 at 3625.731 kb on + strand, within ECD_03445 at 3625.731 kb on + strand, within ECD_03445 at 3625.731 kb on + strand, within ECD_03445 at 3625.732 kb on - strand, within ECD_03445 at 3625.732 kb on - strand, within ECD_03445 at 3625.845 kb on - strand, within ECD_03445 at 3626.121 kb on - strand at 3626.245 kb on - strand at 3626.296 kb on - strand at 3626.320 kb on + strand at 3626.321 kb on - strand at 3626.324 kb on + strand at 3626.324 kb on + strand at 3626.406 kb on - strand, within ECD_03446 at 3626.412 kb on + strand, within ECD_03446 at 3626.477 kb on + strand, within ECD_03446 at 3626.478 kb on - strand, within ECD_03446 at 3626.478 kb on - strand, within ECD_03446 at 3626.504 kb on - strand, within ECD_03446 at 3626.527 kb on - strand, within ECD_03446 at 3626.527 kb on - strand, within ECD_03446 at 3626.617 kb on + strand, within ECD_03446 at 3626.727 kb on - strand, within ECD_03446 at 3626.727 kb on - strand, within ECD_03446 at 3626.727 kb on - strand, within ECD_03446 at 3626.863 kb on - strand, within ECD_03446 at 3626.875 kb on - strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.954 kb on + strand, within ECD_03446 at 3626.955 kb on - strand, within ECD_03446 at 3626.961 kb on - strand, within ECD_03446 at 3626.964 kb on + strand, within ECD_03446 at 3626.964 kb on + strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3627.007 kb on + strand, within ECD_03446 at 3627.039 kb on + strand, within ECD_03446 at 3627.049 kb on - strand, within ECD_03446 at 3627.185 kb on + strand, within ECD_03446 at 3627.186 kb on - strand, within ECD_03446 at 3627.194 kb on + strand, within ECD_03446 at 3627.215 kb on + strand, within ECD_03446
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,623,436 - ECD_03444 0.32 +0.5 3,623,483 + ECD_03444 0.36 +0.1 3,623,484 - ECD_03444 0.36 -1.1 3,623,484 - ECD_03444 0.36 +1.2 3,623,511 + ECD_03444 0.39 -0.4 3,623,609 + ECD_03444 0.47 -0.1 3,623,609 + ECD_03444 0.47 -0.8 3,623,610 - ECD_03444 0.47 -1.7 3,623,610 - ECD_03444 0.47 +1.2 3,623,610 - ECD_03444 0.47 -0.4 3,623,610 - ECD_03444 0.47 +0.1 3,623,671 - ECD_03444 0.53 +2.1 3,623,721 + ECD_03444 0.57 +0.1 3,623,722 - ECD_03444 0.57 +0.2 3,624,083 - ECD_03444 0.88 +0.5 3,624,112 + +1.3 3,624,217 - +4.5 3,624,235 + +1.2 3,624,585 + +0.2 3,624,617 + ECD_03445 0.11 -0.8 3,624,618 - ECD_03445 0.11 -1.3 3,624,647 - ECD_03445 0.13 +0.8 3,624,812 - ECD_03445 0.22 +0.2 3,624,962 + ECD_03445 0.30 -1.4 3,625,026 + ECD_03445 0.34 -0.2 3,625,026 + ECD_03445 0.34 +0.5 3,625,026 + ECD_03445 0.34 -0.1 3,625,026 + ECD_03445 0.34 -1.7 3,625,027 - ECD_03445 0.34 +0.2 3,625,027 - ECD_03445 0.34 -0.5 3,625,029 - ECD_03445 0.34 -1.4 3,625,041 + ECD_03445 0.34 +0.2 3,625,042 - ECD_03445 0.34 -0.3 3,625,043 + ECD_03445 0.35 -0.1 3,625,044 - ECD_03445 0.35 -0.0 3,625,044 - ECD_03445 0.35 +0.3 3,625,197 - ECD_03445 0.43 -0.7 3,625,288 + ECD_03445 0.48 -0.1 3,625,396 - ECD_03445 0.54 +0.1 3,625,396 - ECD_03445 0.54 +1.4 3,625,501 - ECD_03445 0.59 +0.2 3,625,533 + ECD_03445 0.61 +0.1 3,625,533 + ECD_03445 0.61 -1.0 3,625,534 - ECD_03445 0.61 +0.7 3,625,534 - ECD_03445 0.61 +0.9 3,625,542 + ECD_03445 0.62 -0.4 3,625,598 - ECD_03445 0.65 -1.4 3,625,615 + ECD_03445 0.66 -0.4 3,625,696 + ECD_03445 0.70 +0.6 3,625,696 + ECD_03445 0.70 -0.0 3,625,697 - ECD_03445 0.70 +0.5 3,625,731 + ECD_03445 0.72 -0.6 3,625,731 + ECD_03445 0.72 -1.4 3,625,731 + ECD_03445 0.72 -0.7 3,625,732 - ECD_03445 0.72 +0.9 3,625,732 - ECD_03445 0.72 +2.1 3,625,845 - ECD_03445 0.78 +0.3 3,626,121 - -0.8 3,626,245 - -0.1 3,626,296 - -1.8 3,626,320 + -0.3 3,626,321 - -1.1 3,626,324 + -1.1 3,626,324 + -0.5 3,626,406 - ECD_03446 0.11 -0.1 3,626,412 + ECD_03446 0.12 +0.0 3,626,477 + ECD_03446 0.17 -0.1 3,626,478 - ECD_03446 0.17 -0.4 3,626,478 - ECD_03446 0.17 -0.8 3,626,504 - ECD_03446 0.18 +0.0 3,626,527 - ECD_03446 0.20 -1.2 3,626,527 - ECD_03446 0.20 -0.2 3,626,617 + ECD_03446 0.27 -0.1 3,626,727 - ECD_03446 0.34 -0.5 3,626,727 - ECD_03446 0.34 -0.6 3,626,727 - ECD_03446 0.34 -0.3 3,626,863 - ECD_03446 0.44 +0.1 3,626,875 - ECD_03446 0.45 -0.1 3,626,950 + ECD_03446 0.51 -1.3 3,626,950 + ECD_03446 0.51 +0.3 3,626,950 + ECD_03446 0.51 -0.5 3,626,954 + ECD_03446 0.51 -3.2 3,626,955 - ECD_03446 0.51 -0.1 3,626,961 - ECD_03446 0.51 +0.5 3,626,964 + ECD_03446 0.52 -0.9 3,626,964 + ECD_03446 0.52 +0.6 3,626,965 - ECD_03446 0.52 -0.2 3,626,965 - ECD_03446 0.52 -0.1 3,626,965 - ECD_03446 0.52 -0.5 3,626,965 - ECD_03446 0.52 -0.6 3,627,007 + ECD_03446 0.55 -0.2 3,627,039 + ECD_03446 0.57 +0.2 3,627,049 - ECD_03446 0.58 -0.2 3,627,185 + ECD_03446 0.67 -0.1 3,627,186 - ECD_03446 0.67 -1.2 3,627,194 + ECD_03446 0.68 +0.4 3,627,215 + ECD_03446 0.70 +1.7
Or see this region's nucleotide sequence