Strain Fitness in Escherichia coli BL21 around ECD_03443

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03441 and ECD_03442 are separated by 5 nucleotidesECD_03442 and ECD_03443 are separated by 544 nucleotidesECD_03443 and ECD_03444 are separated by 164 nucleotides ECD_03441: ECD_03441 - signal-anchored membrane fusion protein (MFP) component of efflux pump, at 3,619,352 to 3,620,488 _03441 ECD_03442: ECD_03442 - DUF3302 family inner membrane protein, at 3,620,494 to 3,620,817 _03442 ECD_03443: ECD_03443 - aldehyde dehydrogenase B, at 3,621,362 to 3,622,900 _03443 ECD_03444: ECD_03444 - L-threonine dehydrogenase, at 3,623,065 to 3,624,216 _03444 Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3620.378 kb on + strandat 3620.464 kb on - strandat 3620.464 kb on - strandat 3620.481 kb on - strandat 3620.492 kb on + strandat 3620.647 kb on - strand, within ECD_03442at 3620.977 kb on + strandat 3620.999 kb on - strandat 3621.035 kb on + strandat 3621.041 kb on + strandat 3621.207 kb on + strandat 3621.207 kb on + strandat 3621.207 kb on + strandat 3621.208 kb on - strandat 3621.214 kb on - strandat 3621.228 kb on - strandat 3621.247 kb on - strandat 3621.271 kb on + strandat 3621.305 kb on + strandat 3621.314 kb on + strandat 3621.358 kb on + strandat 3621.359 kb on - strandat 3621.359 kb on - strandat 3621.360 kb on + strandat 3621.420 kb on + strandat 3621.507 kb on + strandat 3621.553 kb on + strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.732 kb on + strand, within ECD_03443at 3621.733 kb on - strand, within ECD_03443at 3621.812 kb on - strand, within ECD_03443at 3621.819 kb on + strand, within ECD_03443at 3621.819 kb on + strand, within ECD_03443at 3621.820 kb on - strand, within ECD_03443at 3621.820 kb on - strand, within ECD_03443at 3621.895 kb on + strand, within ECD_03443at 3621.896 kb on - strand, within ECD_03443at 3621.931 kb on + strand, within ECD_03443at 3621.942 kb on + strand, within ECD_03443at 3621.943 kb on - strand, within ECD_03443at 3621.946 kb on + strand, within ECD_03443at 3621.960 kb on - strand, within ECD_03443at 3621.960 kb on - strand, within ECD_03443at 3622.075 kb on + strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.114 kb on + strand, within ECD_03443at 3622.138 kb on + strand, within ECD_03443at 3622.139 kb on - strand, within ECD_03443at 3622.218 kb on - strand, within ECD_03443at 3622.283 kb on + strand, within ECD_03443at 3622.293 kb on - strand, within ECD_03443at 3622.530 kb on - strand, within ECD_03443at 3622.672 kb on + strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.779 kb on + strandat 3622.817 kb on - strandat 3622.870 kb on + strandat 3622.871 kb on - strandat 3622.892 kb on - strandat 3622.924 kb on + strandat 3622.924 kb on + strandat 3622.924 kb on + strandat 3622.926 kb on + strandat 3622.927 kb on - strandat 3622.936 kb on - strandat 3622.985 kb on + strandat 3622.986 kb on - strandat 3622.986 kb on - strandat 3622.986 kb on - strandat 3622.996 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.018 kb on - strandat 3623.018 kb on - strandat 3623.066 kb on + strandat 3623.124 kb on + strandat 3623.125 kb on - strandat 3623.151 kb on + strandat 3623.348 kb on - strand, within ECD_03444at 3623.377 kb on - strand, within ECD_03444at 3623.377 kb on - strand, within ECD_03444at 3623.380 kb on + strand, within ECD_03444at 3623.380 kb on + strand, within ECD_03444at 3623.381 kb on - strand, within ECD_03444at 3623.381 kb on - strand, within ECD_03444at 3623.400 kb on - strand, within ECD_03444at 3623.436 kb on - strand, within ECD_03444at 3623.483 kb on + strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.511 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.671 kb on - strand, within ECD_03444at 3623.721 kb on + strand, within ECD_03444at 3623.722 kb on - strand, within ECD_03444

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,620,378 + +0.6
3,620,464 - +4.6
3,620,464 - -0.8
3,620,481 - +1.2
3,620,492 + -0.7
3,620,647 - ECD_03442 0.47 +0.2
3,620,977 + -0.0
3,620,999 - -2.0
3,621,035 + -0.2
3,621,041 + -0.0
3,621,207 + -0.2
3,621,207 + +0.4
3,621,207 + +0.3
3,621,208 - -0.0
3,621,214 - -0.5
3,621,228 - +0.8
3,621,247 - +3.8
3,621,271 + +5.8
3,621,305 + +0.3
3,621,314 + -0.5
3,621,358 + +0.8
3,621,359 - -0.1
3,621,359 - +0.5
3,621,360 + +0.3
3,621,420 + -0.0
3,621,507 + -2.5
3,621,553 + ECD_03443 0.12 +0.1
3,621,554 - ECD_03443 0.12 +1.5
3,621,554 - ECD_03443 0.12 -0.6
3,621,554 - ECD_03443 0.12 -0.7
3,621,554 - ECD_03443 0.12 -0.5
3,621,554 - ECD_03443 0.12 +0.9
3,621,732 + ECD_03443 0.24 +0.6
3,621,733 - ECD_03443 0.24 +0.0
3,621,812 - ECD_03443 0.29 +1.4
3,621,819 + ECD_03443 0.30 +0.5
3,621,819 + ECD_03443 0.30 -0.2
3,621,820 - ECD_03443 0.30 -0.0
3,621,820 - ECD_03443 0.30 -0.9
3,621,895 + ECD_03443 0.35 +0.8
3,621,896 - ECD_03443 0.35 +1.3
3,621,931 + ECD_03443 0.37 -0.3
3,621,942 + ECD_03443 0.38 -1.2
3,621,943 - ECD_03443 0.38 +0.2
3,621,946 + ECD_03443 0.38 -1.8
3,621,960 - ECD_03443 0.39 +0.4
3,621,960 - ECD_03443 0.39 -0.1
3,622,075 + ECD_03443 0.46 +0.9
3,622,076 - ECD_03443 0.46 +0.1
3,622,076 - ECD_03443 0.46 -0.4
3,622,076 - ECD_03443 0.46 +0.9
3,622,114 + ECD_03443 0.49 +0.2
3,622,138 + ECD_03443 0.50 -0.1
3,622,139 - ECD_03443 0.50 +1.5
3,622,218 - ECD_03443 0.56 +0.8
3,622,283 + ECD_03443 0.60 +0.7
3,622,293 - ECD_03443 0.60 +0.2
3,622,530 - ECD_03443 0.76 -1.8
3,622,672 + ECD_03443 0.85 +0.9
3,622,673 - ECD_03443 0.85 +0.2
3,622,673 - ECD_03443 0.85 +0.6
3,622,673 - ECD_03443 0.85 +0.6
3,622,779 + -0.5
3,622,817 - +0.3
3,622,870 + -0.2
3,622,871 - -0.8
3,622,892 - -0.1
3,622,924 + -0.5
3,622,924 + +0.5
3,622,924 + -0.1
3,622,926 + +0.2
3,622,927 - +1.0
3,622,936 - -0.9
3,622,985 + +0.3
3,622,986 - -0.0
3,622,986 - -0.0
3,622,986 - +1.1
3,622,996 + +1.3
3,623,017 + +1.3
3,623,017 + +0.7
3,623,017 + +0.4
3,623,017 + +0.1
3,623,017 + +0.6
3,623,018 - -0.3
3,623,018 - -1.1
3,623,066 + -0.7
3,623,124 + +0.9
3,623,125 - +0.4
3,623,151 + +0.3
3,623,348 - ECD_03444 0.25 -1.4
3,623,377 - ECD_03444 0.27 +0.1
3,623,377 - ECD_03444 0.27 +0.4
3,623,380 + ECD_03444 0.27 -0.7
3,623,380 + ECD_03444 0.27 +0.3
3,623,381 - ECD_03444 0.27 -0.2
3,623,381 - ECD_03444 0.27 +0.8
3,623,400 - ECD_03444 0.29 -0.3
3,623,436 - ECD_03444 0.32 +0.5
3,623,483 + ECD_03444 0.36 +0.1
3,623,484 - ECD_03444 0.36 -1.1
3,623,484 - ECD_03444 0.36 +1.2
3,623,511 + ECD_03444 0.39 -0.4
3,623,609 + ECD_03444 0.47 -0.1
3,623,609 + ECD_03444 0.47 -0.8
3,623,610 - ECD_03444 0.47 -1.7
3,623,610 - ECD_03444 0.47 +1.2
3,623,610 - ECD_03444 0.47 -0.4
3,623,610 - ECD_03444 0.47 +0.1
3,623,671 - ECD_03444 0.53 +2.1
3,623,721 + ECD_03444 0.57 +0.1
3,623,722 - ECD_03444 0.57 +0.2

Or see this region's nucleotide sequence