Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03364 and ECD_03365 are separated by 369 nucleotides ECD_03365 and ECD_03366 are separated by 210 nucleotides
ECD_03364: ECD_03364 - acid resistance regulon transcriptional activator; autoactivator, at 3,526,173 to 3,526,997
_03364
ECD_03365: ECD_03365 - glutamate decarboxylase A, PLP-dependent, at 3,527,367 to 3,528,767
_03365
ECD_03366: ECD_03366 - putative cytochrome C peroxidase, at 3,528,978 to 3,530,375
_03366
Position (kb)
3527
3528
3529 Strain fitness (log2 ratio)
-1
0
1 at 3526.441 kb on + strand, within ECD_03364 at 3526.442 kb on - strand, within ECD_03364 at 3526.536 kb on - strand, within ECD_03364 at 3526.539 kb on - strand, within ECD_03364 at 3526.605 kb on - strand, within ECD_03364 at 3526.863 kb on - strand, within ECD_03364 at 3527.145 kb on - strand at 3527.287 kb on + strand at 3527.291 kb on - strand at 3527.302 kb on + strand at 3527.360 kb on + strand at 3527.360 kb on + strand at 3528.616 kb on + strand, within ECD_03365 at 3528.996 kb on - strand at 3528.997 kb on + strand at 3529.041 kb on - strand at 3529.082 kb on - strand at 3529.139 kb on - strand, within ECD_03366 at 3529.160 kb on + strand, within ECD_03366 at 3529.160 kb on + strand, within ECD_03366 at 3529.160 kb on + strand, within ECD_03366 at 3529.164 kb on + strand, within ECD_03366 at 3529.422 kb on - strand, within ECD_03366 at 3529.532 kb on + strand, within ECD_03366 at 3529.648 kb on - strand, within ECD_03366 at 3529.655 kb on + strand, within ECD_03366 at 3529.656 kb on - strand, within ECD_03366 at 3529.656 kb on - strand, within ECD_03366 at 3529.656 kb on - strand, within ECD_03366 at 3529.659 kb on + strand, within ECD_03366
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,526,441 + ECD_03364 0.32 +0.2 3,526,442 - ECD_03364 0.33 -0.6 3,526,536 - ECD_03364 0.44 +0.2 3,526,539 - ECD_03364 0.44 -0.1 3,526,605 - ECD_03364 0.52 -0.5 3,526,863 - ECD_03364 0.84 -0.4 3,527,145 - +0.3 3,527,287 + +0.1 3,527,291 - +0.4 3,527,302 + +0.4 3,527,360 + -0.5 3,527,360 + -0.7 3,528,616 + ECD_03365 0.89 +0.1 3,528,996 - -0.0 3,528,997 + +0.3 3,529,041 - -0.9 3,529,082 - +1.0 3,529,139 - ECD_03366 0.12 -1.0 3,529,160 + ECD_03366 0.13 -0.1 3,529,160 + ECD_03366 0.13 -0.7 3,529,160 + ECD_03366 0.13 -1.7 3,529,164 + ECD_03366 0.13 -0.3 3,529,422 - ECD_03366 0.32 -0.3 3,529,532 + ECD_03366 0.40 +0.3 3,529,648 - ECD_03366 0.48 -1.2 3,529,655 + ECD_03366 0.48 -1.6 3,529,656 - ECD_03366 0.48 -0.0 3,529,656 - ECD_03366 0.48 +1.4 3,529,656 - ECD_03366 0.48 +0.7 3,529,659 + ECD_03366 0.49 -0.8
Or see this region's nucleotide sequence