Strain Fitness in Escherichia coli BL21 around ECD_03120

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03118 and ECD_03119 are separated by 25 nucleotidesECD_03119 and ECD_03120 are separated by 85 nucleotidesECD_03120 and ECD_03121 are separated by 83 nucleotidesECD_03121 and ECD_03122 are separated by 2 nucleotides ECD_03118: ECD_03118 - tRNA-dihydrouridine synthase B, at 3,271,436 to 3,272,401 _03118 ECD_03119: ECD_03119 - global DNA-binding transcriptional dual regulator, at 3,272,427 to 3,272,723 _03119 ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693 _03120 ECD_03121: ECD_03121 - putative membrane protein, at 3,273,777 to 3,273,956 _03121 ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621 _03122 Position (kb) 3272 3273 3274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3271.882 kb on + strand, within ECD_03118at 3271.982 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3272.078 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.103 kb on + strand, within ECD_03118at 3272.153 kb on + strand, within ECD_03118at 3272.153 kb on + strand, within ECD_03118at 3272.243 kb on + strand, within ECD_03118at 3272.243 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.409 kb on + strandat 3272.409 kb on + strandat 3272.409 kb on + strandat 3272.426 kb on + strandat 3272.426 kb on + strandat 3272.427 kb on - strandat 3272.455 kb on + strandat 3272.577 kb on + strand, within ECD_03119at 3272.631 kb on + strand, within ECD_03119at 3272.631 kb on + strand, within ECD_03119at 3272.684 kb on + strand, within ECD_03119at 3272.895 kb on - strandat 3272.895 kb on - strandat 3272.899 kb on - strand, within ECD_03120at 3272.936 kb on - strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.061 kb on - strand, within ECD_03120at 3273.115 kb on - strand, within ECD_03120at 3273.143 kb on - strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.226 kb on + strand, within ECD_03120at 3273.227 kb on - strand, within ECD_03120at 3273.316 kb on + strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.367 kb on + strand, within ECD_03120at 3273.371 kb on + strand, within ECD_03120at 3273.593 kb on - strand, within ECD_03120at 3273.734 kb on - strandat 3273.833 kb on + strand, within ECD_03121at 3274.327 kb on - strand, within ECD_03122at 3274.477 kb on - strand, within ECD_03122at 3274.536 kb on - strand, within ECD_03122

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,271,882 + ECD_03118 0.46 +3.2
3,271,982 + ECD_03118 0.57 +4.2
3,271,990 + ECD_03118 0.57 +4.4
3,271,990 + ECD_03118 0.57 +4.1
3,272,078 + ECD_03118 0.66 +4.5
3,272,080 + ECD_03118 0.67 +4.3
3,272,080 + ECD_03118 0.67 +4.7
3,272,080 + ECD_03118 0.67 +3.9
3,272,103 + ECD_03118 0.69 +3.8
3,272,153 + ECD_03118 0.74 +3.3
3,272,153 + ECD_03118 0.74 +4.7
3,272,243 + ECD_03118 0.84 +3.9
3,272,243 + ECD_03118 0.84 +4.3
3,272,275 + ECD_03118 0.87 +4.5
3,272,275 + ECD_03118 0.87 +4.2
3,272,275 + ECD_03118 0.87 +4.1
3,272,409 + +4.2
3,272,409 + +3.2
3,272,409 + +2.8
3,272,426 + +1.4
3,272,426 + +2.8
3,272,427 - -0.1
3,272,455 + +1.7
3,272,577 + ECD_03119 0.51 +1.3
3,272,631 + ECD_03119 0.69 +0.2
3,272,631 + ECD_03119 0.69 +3.4
3,272,684 + ECD_03119 0.87 +0.4
3,272,895 - -1.7
3,272,895 - +1.5
3,272,899 - ECD_03120 0.10 +0.9
3,272,936 - ECD_03120 0.14 +1.5
3,273,055 + ECD_03120 0.28 +0.0
3,273,055 + ECD_03120 0.28 -1.4
3,273,061 - ECD_03120 0.28 +0.9
3,273,115 - ECD_03120 0.35 +0.8
3,273,143 - ECD_03120 0.38 -3.0
3,273,187 + ECD_03120 0.43 -0.2
3,273,187 + ECD_03120 0.43 -0.1
3,273,188 - ECD_03120 0.43 +0.6
3,273,188 - ECD_03120 0.43 +1.1
3,273,188 - ECD_03120 0.43 +0.5
3,273,226 + ECD_03120 0.47 -1.5
3,273,227 - ECD_03120 0.47 -0.3
3,273,316 + ECD_03120 0.57 -0.8
3,273,317 - ECD_03120 0.57 +0.8
3,273,317 - ECD_03120 0.57 +1.5
3,273,367 + ECD_03120 0.63 +2.1
3,273,371 + ECD_03120 0.64 -0.7
3,273,593 - ECD_03120 0.89 +0.1
3,273,734 - -0.1
3,273,833 + ECD_03121 0.31 +0.9
3,274,327 - ECD_03122 0.56 +0.2
3,274,477 - ECD_03122 0.78 -0.1
3,274,536 - ECD_03122 0.87 +0.1

Or see this region's nucleotide sequence