Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02992 and ECD_02993 are separated by 374 nucleotides ECD_02993 and ECD_02994 are separated by 147 nucleotides ECD_02994 and ECD_02995 are separated by 143 nucleotides
ECD_02992: ECD_02992 - putative (D)-galactarate transporter, at 3,139,767 to 3,141,101
_02992
ECD_02993: ECD_02993 - D-galactarate dehydrogenase, at 3,141,476 to 3,143,047
_02993
ECD_02994: ECD_02994 - antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system, at 3,143,195 to 3,143,530
_02994
ECD_02995: ECD_02995 - toxin of the SohB(PrlF)-YhaV toxin-antitoxin system, at 3,143,674 to 3,143,994
_02995
Position (kb)
3141
3142
3143
3144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.501 kb on + strand, within ECD_02992 at 3140.840 kb on - strand, within ECD_02992 at 3140.840 kb on - strand, within ECD_02992 at 3140.840 kb on - strand, within ECD_02992 at 3140.906 kb on - strand, within ECD_02992 at 3140.933 kb on - strand, within ECD_02992 at 3140.953 kb on - strand, within ECD_02992 at 3141.036 kb on - strand at 3141.298 kb on + strand at 3141.522 kb on + strand at 3141.634 kb on + strand, within ECD_02993 at 3141.750 kb on + strand, within ECD_02993 at 3141.751 kb on - strand, within ECD_02993 at 3141.751 kb on - strand, within ECD_02993 at 3141.827 kb on + strand, within ECD_02993 at 3141.827 kb on + strand, within ECD_02993 at 3141.827 kb on + strand, within ECD_02993 at 3141.828 kb on - strand, within ECD_02993 at 3141.926 kb on + strand, within ECD_02993 at 3141.927 kb on - strand, within ECD_02993 at 3141.927 kb on - strand, within ECD_02993 at 3141.931 kb on - strand, within ECD_02993 at 3141.931 kb on - strand, within ECD_02993 at 3141.931 kb on - strand, within ECD_02993 at 3141.931 kb on - strand, within ECD_02993 at 3141.934 kb on - strand, within ECD_02993 at 3142.004 kb on + strand, within ECD_02993 at 3142.005 kb on - strand, within ECD_02993 at 3142.044 kb on + strand, within ECD_02993 at 3142.048 kb on + strand, within ECD_02993 at 3142.049 kb on - strand, within ECD_02993 at 3142.049 kb on - strand, within ECD_02993 at 3142.054 kb on + strand, within ECD_02993 at 3142.067 kb on - strand, within ECD_02993 at 3142.099 kb on - strand, within ECD_02993 at 3142.172 kb on - strand, within ECD_02993 at 3142.273 kb on - strand, within ECD_02993 at 3142.389 kb on - strand, within ECD_02993 at 3142.530 kb on - strand, within ECD_02993 at 3142.534 kb on + strand, within ECD_02993 at 3142.538 kb on + strand, within ECD_02993 at 3142.539 kb on - strand, within ECD_02993 at 3142.539 kb on - strand, within ECD_02993 at 3142.611 kb on + strand, within ECD_02993 at 3142.639 kb on + strand, within ECD_02993 at 3142.710 kb on - strand, within ECD_02993 at 3142.876 kb on - strand, within ECD_02993 at 3142.951 kb on + strand at 3143.124 kb on + strand at 3143.124 kb on + strand at 3143.125 kb on - strand at 3143.223 kb on + strand at 3143.267 kb on - strand, within ECD_02994 at 3143.292 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.353 kb on + strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.565 kb on - strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.567 kb on - strand at 3143.567 kb on - strand at 3143.604 kb on - strand at 3143.706 kb on + strand, within ECD_02995 at 3143.707 kb on - strand, within ECD_02995 at 3143.826 kb on + strand, within ECD_02995 at 3143.888 kb on - strand, within ECD_02995 at 3143.916 kb on - strand, within ECD_02995
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,140,480 + ECD_02992 0.53 +0.3 3,140,480 + ECD_02992 0.53 -1.2 3,140,480 + ECD_02992 0.53 +0.8 3,140,480 + ECD_02992 0.53 -0.9 3,140,480 + ECD_02992 0.53 -0.2 3,140,480 + ECD_02992 0.53 -0.3 3,140,480 + ECD_02992 0.53 +0.2 3,140,481 - ECD_02992 0.53 +0.2 3,140,481 - ECD_02992 0.53 -0.4 3,140,481 - ECD_02992 0.53 +0.9 3,140,481 - ECD_02992 0.53 -1.7 3,140,481 - ECD_02992 0.53 +0.3 3,140,501 + ECD_02992 0.55 -1.7 3,140,840 - ECD_02992 0.80 -1.1 3,140,840 - ECD_02992 0.80 -0.0 3,140,840 - ECD_02992 0.80 +0.2 3,140,906 - ECD_02992 0.85 +0.5 3,140,933 - ECD_02992 0.87 -0.9 3,140,953 - ECD_02992 0.89 -0.3 3,141,036 - +0.8 3,141,298 + +2.4 3,141,522 + +0.3 3,141,634 + ECD_02993 0.10 -0.3 3,141,750 + ECD_02993 0.17 +3.4 3,141,751 - ECD_02993 0.17 +4.1 3,141,751 - ECD_02993 0.17 -0.6 3,141,827 + ECD_02993 0.22 +3.9 3,141,827 + ECD_02993 0.22 +0.2 3,141,827 + ECD_02993 0.22 -0.3 3,141,828 - ECD_02993 0.22 -0.0 3,141,926 + ECD_02993 0.29 +2.7 3,141,927 - ECD_02993 0.29 -0.2 3,141,927 - ECD_02993 0.29 -1.0 3,141,931 - ECD_02993 0.29 -1.1 3,141,931 - ECD_02993 0.29 +1.0 3,141,931 - ECD_02993 0.29 +2.3 3,141,931 - ECD_02993 0.29 -0.5 3,141,934 - ECD_02993 0.29 -0.8 3,142,004 + ECD_02993 0.34 -1.8 3,142,005 - ECD_02993 0.34 +4.8 3,142,044 + ECD_02993 0.36 +2.4 3,142,048 + ECD_02993 0.36 +2.0 3,142,049 - ECD_02993 0.36 +2.2 3,142,049 - ECD_02993 0.36 -0.5 3,142,054 + ECD_02993 0.37 +3.7 3,142,067 - ECD_02993 0.38 -1.5 3,142,099 - ECD_02993 0.40 +3.2 3,142,172 - ECD_02993 0.44 +0.8 3,142,273 - ECD_02993 0.51 +3.2 3,142,389 - ECD_02993 0.58 +0.4 3,142,530 - ECD_02993 0.67 +0.5 3,142,534 + ECD_02993 0.67 +0.4 3,142,538 + ECD_02993 0.68 -0.3 3,142,539 - ECD_02993 0.68 -0.5 3,142,539 - ECD_02993 0.68 -1.1 3,142,611 + ECD_02993 0.72 +2.2 3,142,639 + ECD_02993 0.74 -1.4 3,142,710 - ECD_02993 0.78 -0.0 3,142,876 - ECD_02993 0.89 -1.2 3,142,951 + +0.6 3,143,124 + -0.0 3,143,124 + -0.5 3,143,125 - -0.5 3,143,223 + -0.0 3,143,267 - ECD_02994 0.21 +1.4 3,143,292 + ECD_02994 0.29 -0.1 3,143,349 + ECD_02994 0.46 +2.8 3,143,349 + ECD_02994 0.46 +4.4 3,143,349 + ECD_02994 0.46 +2.9 3,143,350 - ECD_02994 0.46 +0.2 3,143,350 - ECD_02994 0.46 -0.8 3,143,350 - ECD_02994 0.46 +1.8 3,143,350 - ECD_02994 0.46 +0.5 3,143,353 + ECD_02994 0.47 -0.2 3,143,354 - ECD_02994 0.47 -0.4 3,143,354 - ECD_02994 0.47 +2.5 3,143,354 - ECD_02994 0.47 -0.0 3,143,386 + ECD_02994 0.57 -0.6 3,143,386 + ECD_02994 0.57 -0.2 3,143,387 - ECD_02994 0.57 +0.2 3,143,387 - ECD_02994 0.57 -0.6 3,143,387 - ECD_02994 0.57 -2.4 3,143,389 + ECD_02994 0.58 -0.8 3,143,389 + ECD_02994 0.58 +0.0 3,143,389 + ECD_02994 0.58 -1.4 3,143,389 + ECD_02994 0.58 +0.6 3,143,389 + ECD_02994 0.58 -0.9 3,143,390 - ECD_02994 0.58 +0.4 3,143,390 - ECD_02994 0.58 +0.7 3,143,565 - -0.6 3,143,566 + -0.4 3,143,566 + +0.2 3,143,566 + -0.4 3,143,567 - -1.0 3,143,567 - +1.0 3,143,604 - -0.1 3,143,706 + ECD_02995 0.10 -1.2 3,143,707 - ECD_02995 0.10 -0.7 3,143,826 + ECD_02995 0.47 -1.0 3,143,888 - ECD_02995 0.67 -1.0 3,143,916 - ECD_02995 0.75 +3.1
Or see this region's nucleotide sequence