Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02990 and ECD_02991 are separated by 29 nucleotides ECD_02991 and ECD_02992 are separated by 15 nucleotides
ECD_02990: ECD_02990 - tartronate semialdehyde reductase, at 3,138,061 to 3,138,951
_02990
ECD_02991: ECD_02991 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 3,138,981 to 3,139,751
_02991
ECD_02992: ECD_02992 - putative (D)-galactarate transporter, at 3,139,767 to 3,141,101
_02992
Position (kb)
3138
3139
3140 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3138.038 kb on + strand at 3138.038 kb on + strand at 3138.070 kb on - strand at 3138.099 kb on - strand at 3138.099 kb on - strand at 3138.115 kb on - strand at 3138.130 kb on + strand at 3138.210 kb on + strand, within ECD_02990 at 3138.235 kb on - strand, within ECD_02990 at 3138.235 kb on - strand, within ECD_02990 at 3138.238 kb on - strand, within ECD_02990 at 3138.238 kb on - strand, within ECD_02990 at 3138.238 kb on - strand, within ECD_02990 at 3138.250 kb on - strand, within ECD_02990 at 3138.447 kb on + strand, within ECD_02990 at 3138.506 kb on + strand, within ECD_02990 at 3138.507 kb on - strand, within ECD_02990 at 3138.509 kb on + strand, within ECD_02990 at 3138.509 kb on + strand, within ECD_02990 at 3138.510 kb on - strand, within ECD_02990 at 3138.510 kb on - strand, within ECD_02990 at 3138.510 kb on - strand, within ECD_02990 at 3138.604 kb on - strand, within ECD_02990 at 3138.661 kb on - strand, within ECD_02990 at 3138.668 kb on + strand, within ECD_02990 at 3138.680 kb on - strand, within ECD_02990 at 3138.685 kb on - strand, within ECD_02990 at 3138.763 kb on + strand, within ECD_02990 at 3138.841 kb on - strand, within ECD_02990 at 3138.841 kb on - strand, within ECD_02990 at 3138.898 kb on - strand at 3138.931 kb on - strand at 3138.951 kb on + strand at 3138.952 kb on - strand at 3139.167 kb on + strand, within ECD_02991 at 3139.200 kb on + strand, within ECD_02991 at 3139.274 kb on + strand, within ECD_02991 at 3139.279 kb on - strand, within ECD_02991 at 3139.297 kb on - strand, within ECD_02991 at 3139.310 kb on + strand, within ECD_02991 at 3139.310 kb on + strand, within ECD_02991 at 3139.311 kb on - strand, within ECD_02991 at 3139.311 kb on - strand, within ECD_02991 at 3139.361 kb on + strand, within ECD_02991 at 3139.362 kb on - strand, within ECD_02991 at 3139.453 kb on - strand, within ECD_02991 at 3139.473 kb on - strand, within ECD_02991 at 3139.475 kb on - strand, within ECD_02991 at 3139.499 kb on + strand, within ECD_02991 at 3139.533 kb on + strand, within ECD_02991 at 3139.533 kb on + strand, within ECD_02991 at 3139.534 kb on - strand, within ECD_02991 at 3139.756 kb on + strand at 3139.758 kb on + strand at 3139.758 kb on + strand at 3139.759 kb on - strand at 3139.768 kb on + strand at 3139.769 kb on - strand at 3139.785 kb on - strand at 3139.790 kb on + strand at 3139.803 kb on + strand at 3139.803 kb on + strand at 3139.884 kb on + strand at 3139.885 kb on - strand at 3139.891 kb on + strand at 3140.074 kb on + strand, within ECD_02992 at 3140.075 kb on - strand, within ECD_02992 at 3140.075 kb on - strand, within ECD_02992 at 3140.075 kb on - strand, within ECD_02992 at 3140.075 kb on - strand, within ECD_02992 at 3140.075 kb on - strand, within ECD_02992 at 3140.078 kb on + strand, within ECD_02992 at 3140.078 kb on + strand, within ECD_02992 at 3140.078 kb on + strand, within ECD_02992 at 3140.078 kb on + strand, within ECD_02992 at 3140.078 kb on + strand, within ECD_02992 at 3140.079 kb on - strand, within ECD_02992 at 3140.082 kb on + strand, within ECD_02992 at 3140.082 kb on + strand, within ECD_02992 at 3140.083 kb on - strand, within ECD_02992 at 3140.083 kb on - strand, within ECD_02992 at 3140.083 kb on - strand, within ECD_02992 at 3140.083 kb on - strand, within ECD_02992 at 3140.124 kb on + strand, within ECD_02992 at 3140.125 kb on - strand, within ECD_02992 at 3140.129 kb on + strand, within ECD_02992 at 3140.129 kb on + strand, within ECD_02992 at 3140.130 kb on - strand, within ECD_02992 at 3140.130 kb on - strand, within ECD_02992 at 3140.130 kb on - strand, within ECD_02992 at 3140.130 kb on - strand, within ECD_02992 at 3140.275 kb on + strand, within ECD_02992 at 3140.324 kb on - strand, within ECD_02992 at 3140.377 kb on + strand, within ECD_02992 at 3140.378 kb on - strand, within ECD_02992 at 3140.378 kb on - strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.480 kb on + strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.481 kb on - strand, within ECD_02992 at 3140.501 kb on + strand, within ECD_02992
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,138,038 + -0.2 3,138,038 + -1.0 3,138,070 - -0.6 3,138,099 - +0.0 3,138,099 - -1.0 3,138,115 - +0.2 3,138,130 + +0.1 3,138,210 + ECD_02990 0.17 -0.3 3,138,235 - ECD_02990 0.20 +0.3 3,138,235 - ECD_02990 0.20 +0.0 3,138,238 - ECD_02990 0.20 +3.0 3,138,238 - ECD_02990 0.20 -2.4 3,138,238 - ECD_02990 0.20 +2.4 3,138,250 - ECD_02990 0.21 +2.0 3,138,447 + ECD_02990 0.43 -0.3 3,138,506 + ECD_02990 0.50 -0.6 3,138,507 - ECD_02990 0.50 -1.1 3,138,509 + ECD_02990 0.50 -0.4 3,138,509 + ECD_02990 0.50 +0.5 3,138,510 - ECD_02990 0.50 -0.3 3,138,510 - ECD_02990 0.50 -0.4 3,138,510 - ECD_02990 0.50 +0.2 3,138,604 - ECD_02990 0.61 +3.8 3,138,661 - ECD_02990 0.67 -0.6 3,138,668 + ECD_02990 0.68 -1.0 3,138,680 - ECD_02990 0.69 -0.1 3,138,685 - ECD_02990 0.70 -0.2 3,138,763 + ECD_02990 0.79 +0.5 3,138,841 - ECD_02990 0.88 -0.6 3,138,841 - ECD_02990 0.88 +0.2 3,138,898 - -0.5 3,138,931 - -0.2 3,138,951 + +1.0 3,138,952 - -1.3 3,139,167 + ECD_02991 0.24 +0.2 3,139,200 + ECD_02991 0.28 -0.8 3,139,274 + ECD_02991 0.38 +3.0 3,139,279 - ECD_02991 0.39 +2.9 3,139,297 - ECD_02991 0.41 -0.3 3,139,310 + ECD_02991 0.43 +0.9 3,139,310 + ECD_02991 0.43 -1.7 3,139,311 - ECD_02991 0.43 -0.2 3,139,311 - ECD_02991 0.43 -1.2 3,139,361 + ECD_02991 0.49 -1.3 3,139,362 - ECD_02991 0.49 -2.0 3,139,453 - ECD_02991 0.61 -0.6 3,139,473 - ECD_02991 0.64 -2.6 3,139,475 - ECD_02991 0.64 -0.3 3,139,499 + ECD_02991 0.67 -1.4 3,139,533 + ECD_02991 0.72 -0.8 3,139,533 + ECD_02991 0.72 +0.2 3,139,534 - ECD_02991 0.72 -2.1 3,139,756 + -1.2 3,139,758 + -1.1 3,139,758 + +0.9 3,139,759 - +0.7 3,139,768 + -1.3 3,139,769 - +2.4 3,139,785 - +2.5 3,139,790 + -0.3 3,139,803 + -0.8 3,139,803 + -0.4 3,139,884 + +0.2 3,139,885 - +2.1 3,139,891 + +0.2 3,140,074 + ECD_02992 0.23 +0.1 3,140,075 - ECD_02992 0.23 +3.9 3,140,075 - ECD_02992 0.23 -0.5 3,140,075 - ECD_02992 0.23 -0.9 3,140,075 - ECD_02992 0.23 +0.1 3,140,075 - ECD_02992 0.23 -0.4 3,140,078 + ECD_02992 0.23 +0.5 3,140,078 + ECD_02992 0.23 -0.6 3,140,078 + ECD_02992 0.23 -1.8 3,140,078 + ECD_02992 0.23 -0.3 3,140,078 + ECD_02992 0.23 -0.2 3,140,079 - ECD_02992 0.23 +0.9 3,140,082 + ECD_02992 0.24 -0.5 3,140,082 + ECD_02992 0.24 -0.8 3,140,083 - ECD_02992 0.24 -1.2 3,140,083 - ECD_02992 0.24 -0.1 3,140,083 - ECD_02992 0.24 -0.4 3,140,083 - ECD_02992 0.24 -1.1 3,140,124 + ECD_02992 0.27 -1.4 3,140,125 - ECD_02992 0.27 -0.3 3,140,129 + ECD_02992 0.27 -1.0 3,140,129 + ECD_02992 0.27 -0.1 3,140,130 - ECD_02992 0.27 +1.4 3,140,130 - ECD_02992 0.27 -0.6 3,140,130 - ECD_02992 0.27 -0.1 3,140,130 - ECD_02992 0.27 +0.8 3,140,275 + ECD_02992 0.38 -0.6 3,140,324 - ECD_02992 0.42 +1.2 3,140,377 + ECD_02992 0.46 -0.8 3,140,378 - ECD_02992 0.46 -0.5 3,140,378 - ECD_02992 0.46 -1.0 3,140,480 + ECD_02992 0.53 +0.3 3,140,480 + ECD_02992 0.53 -1.2 3,140,480 + ECD_02992 0.53 +0.8 3,140,480 + ECD_02992 0.53 -0.9 3,140,480 + ECD_02992 0.53 -0.2 3,140,480 + ECD_02992 0.53 -0.3 3,140,480 + ECD_02992 0.53 +0.2 3,140,481 - ECD_02992 0.53 +0.2 3,140,481 - ECD_02992 0.53 -0.4 3,140,481 - ECD_02992 0.53 +0.9 3,140,481 - ECD_02992 0.53 -1.7 3,140,481 - ECD_02992 0.53 +0.3 3,140,501 + ECD_02992 0.55 -1.7
Or see this region's nucleotide sequence