Strain Fitness in Escherichia coli BL21 around ECD_02977

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02975 and ECD_02976 are separated by 22 nucleotidesECD_02976 and ECD_02977 are separated by 133 nucleotidesECD_02977 and ECD_02978 are separated by 27 nucleotides ECD_02975: ECD_02975 - redox-sensitive bicupin, at 3,120,617 to 3,121,318 _02975 ECD_02976: ECD_02976 - uncharacterized protein, at 3,121,341 to 3,121,505 _02976 ECD_02977: ECD_02977 - putative L-serine dehydratase alpha chain, at 3,121,639 to 3,122,949 _02977 ECD_02978: ECD_02978 - putative transporter, at 3,122,977 to 3,124,308 _02978 Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3120.683 kb on - strandat 3120.701 kb on + strand, within ECD_02975at 3120.702 kb on - strand, within ECD_02975at 3120.725 kb on + strand, within ECD_02975at 3120.725 kb on + strand, within ECD_02975at 3120.791 kb on + strand, within ECD_02975at 3120.840 kb on - strand, within ECD_02975at 3120.917 kb on + strand, within ECD_02975at 3120.919 kb on + strand, within ECD_02975at 3121.041 kb on + strand, within ECD_02975at 3121.041 kb on + strand, within ECD_02975at 3121.316 kb on + strandat 3121.316 kb on + strandat 3121.317 kb on - strandat 3121.317 kb on - strandat 3121.503 kb on + strandat 3121.572 kb on + strandat 3121.659 kb on + strandat 3121.705 kb on + strandat 3121.706 kb on - strandat 3121.919 kb on + strand, within ECD_02977at 3121.919 kb on + strand, within ECD_02977at 3121.920 kb on - strand, within ECD_02977at 3122.018 kb on + strand, within ECD_02977at 3122.018 kb on + strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.143 kb on - strand, within ECD_02977at 3122.143 kb on - strand, within ECD_02977at 3122.172 kb on + strand, within ECD_02977at 3122.196 kb on + strand, within ECD_02977at 3122.271 kb on + strand, within ECD_02977at 3122.287 kb on - strand, within ECD_02977at 3122.797 kb on + strand, within ECD_02977at 3122.797 kb on + strand, within ECD_02977at 3122.798 kb on - strand, within ECD_02977at 3122.869 kb on - strandat 3122.950 kb on - strandat 3123.053 kb on + strandat 3123.053 kb on + strandat 3123.053 kb on + strandat 3123.054 kb on - strandat 3123.054 kb on - strandat 3123.078 kb on - strandat 3123.106 kb on + strandat 3123.107 kb on - strandat 3123.107 kb on - strandat 3123.127 kb on - strand, within ECD_02978at 3123.132 kb on + strand, within ECD_02978at 3123.133 kb on - strand, within ECD_02978at 3123.163 kb on + strand, within ECD_02978at 3123.268 kb on + strand, within ECD_02978at 3123.299 kb on - strand, within ECD_02978at 3123.302 kb on + strand, within ECD_02978at 3123.387 kb on + strand, within ECD_02978at 3123.429 kb on - strand, within ECD_02978at 3123.436 kb on + strand, within ECD_02978at 3123.538 kb on - strand, within ECD_02978at 3123.640 kb on - strand, within ECD_02978at 3123.640 kb on - strand, within ECD_02978at 3123.643 kb on - strand, within ECD_02978at 3123.643 kb on - strand, within ECD_02978at 3123.692 kb on + strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.837 kb on - strand, within ECD_02978at 3123.837 kb on - strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.947 kb on - strand, within ECD_02978

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,120,683 - -0.8
3,120,701 + ECD_02975 0.12 +1.7
3,120,702 - ECD_02975 0.12 -0.8
3,120,725 + ECD_02975 0.15 -1.8
3,120,725 + ECD_02975 0.15 -0.7
3,120,791 + ECD_02975 0.25 -0.4
3,120,840 - ECD_02975 0.32 -0.4
3,120,917 + ECD_02975 0.43 +0.2
3,120,919 + ECD_02975 0.43 -0.5
3,121,041 + ECD_02975 0.60 -1.2
3,121,041 + ECD_02975 0.60 +1.9
3,121,316 + -1.2
3,121,316 + -1.6
3,121,317 - -0.4
3,121,317 - -0.3
3,121,503 + -1.1
3,121,572 + -1.0
3,121,659 + +2.8
3,121,705 + -1.0
3,121,706 - -1.1
3,121,919 + ECD_02977 0.21 -0.8
3,121,919 + ECD_02977 0.21 -1.1
3,121,920 - ECD_02977 0.21 -0.7
3,122,018 + ECD_02977 0.29 +1.1
3,122,018 + ECD_02977 0.29 +0.7
3,122,019 - ECD_02977 0.29 -0.6
3,122,019 - ECD_02977 0.29 -1.1
3,122,019 - ECD_02977 0.29 -0.3
3,122,143 - ECD_02977 0.38 +0.3
3,122,143 - ECD_02977 0.38 +3.1
3,122,172 + ECD_02977 0.41 +4.6
3,122,196 + ECD_02977 0.42 +2.9
3,122,271 + ECD_02977 0.48 -0.5
3,122,287 - ECD_02977 0.49 +1.9
3,122,797 + ECD_02977 0.88 -2.7
3,122,797 + ECD_02977 0.88 -0.0
3,122,798 - ECD_02977 0.88 +0.2
3,122,869 - +1.5
3,122,950 - +3.4
3,123,053 + +0.2
3,123,053 + +3.5
3,123,053 + -1.0
3,123,054 - -0.3
3,123,054 - +3.0
3,123,078 - +0.2
3,123,106 + +0.2
3,123,107 - -0.6
3,123,107 - +0.2
3,123,127 - ECD_02978 0.11 +3.1
3,123,132 + ECD_02978 0.12 -0.3
3,123,133 - ECD_02978 0.12 -0.2
3,123,163 + ECD_02978 0.14 -0.2
3,123,268 + ECD_02978 0.22 +2.6
3,123,299 - ECD_02978 0.24 -0.6
3,123,302 + ECD_02978 0.24 -1.6
3,123,387 + ECD_02978 0.31 -0.5
3,123,429 - ECD_02978 0.34 +0.2
3,123,436 + ECD_02978 0.34 -0.3
3,123,538 - ECD_02978 0.42 -0.7
3,123,640 - ECD_02978 0.50 +0.6
3,123,640 - ECD_02978 0.50 +0.3
3,123,643 - ECD_02978 0.50 -0.3
3,123,643 - ECD_02978 0.50 -1.1
3,123,692 + ECD_02978 0.54 -1.9
3,123,693 - ECD_02978 0.54 -0.0
3,123,693 - ECD_02978 0.54 -0.3
3,123,693 - ECD_02978 0.54 -1.1
3,123,693 - ECD_02978 0.54 +4.0
3,123,837 - ECD_02978 0.65 +0.7
3,123,837 - ECD_02978 0.65 +0.2
3,123,879 + ECD_02978 0.68 -1.1
3,123,879 + ECD_02978 0.68 -1.4
3,123,879 + ECD_02978 0.68 -0.1
3,123,880 - ECD_02978 0.68 +3.0
3,123,880 - ECD_02978 0.68 -0.8
3,123,880 - ECD_02978 0.68 -0.2
3,123,880 - ECD_02978 0.68 -1.2
3,123,947 - ECD_02978 0.73 +1.5

Or see this region's nucleotide sequence