Strain Fitness in Escherichia coli BL21 around ECD_02727

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02726 and ECD_02727 are separated by 111 nucleotidesECD_02727 and ECD_02728 are separated by 39 nucleotidesECD_02728 and ECD_02729 overlap by 20 nucleotidesECD_02729 and ECD_02730 are separated by 242 nucleotides ECD_02726: ECD_02726 - site-specific tyrosine recombinase, at 2,869,707 to 2,870,603 _02726 ECD_02727: ECD_02727 - flavodoxin 2, at 2,870,715 to 2,871,236 _02727 ECD_02728: ECD_02728 - toxin of CptAB toxin-antitoxin pair, at 2,871,276 to 2,871,683 _02728 ECD_02729: ECD_02729 - flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair, at 2,871,664 to 2,871,930 _02729 ECD_02730: ECD_02730 - iron-sulfur cluster repair protein, plumbagin resistance, at 2,872,173 to 2,873,153 _02730 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2869.766 kb on + strandat 2869.767 kb on - strandat 2869.767 kb on - strandat 2869.822 kb on - strand, within ECD_02726at 2869.839 kb on + strand, within ECD_02726at 2869.842 kb on + strand, within ECD_02726at 2869.916 kb on - strand, within ECD_02726at 2870.091 kb on - strand, within ECD_02726at 2870.176 kb on + strand, within ECD_02726at 2870.176 kb on + strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.206 kb on - strand, within ECD_02726at 2870.226 kb on + strand, within ECD_02726at 2870.239 kb on - strand, within ECD_02726at 2870.242 kb on - strand, within ECD_02726at 2870.242 kb on - strand, within ECD_02726at 2870.266 kb on - strand, within ECD_02726at 2870.403 kb on - strand, within ECD_02726at 2870.403 kb on - strand, within ECD_02726at 2870.532 kb on - strandat 2870.615 kb on - strandat 2870.615 kb on - strandat 2870.615 kb on - strandat 2870.636 kb on + strandat 2870.643 kb on + strandat 2870.644 kb on - strandat 2870.644 kb on - strandat 2870.671 kb on + strandat 2870.671 kb on + strandat 2870.671 kb on + strandat 2870.676 kb on + strandat 2870.676 kb on + strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.714 kb on + strandat 2870.733 kb on + strandat 2870.751 kb on + strandat 2870.751 kb on + strandat 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.839 kb on + strand, within ECD_02727at 2870.850 kb on + strand, within ECD_02727at 2870.851 kb on - strand, within ECD_02727at 2870.967 kb on + strand, within ECD_02727at 2870.968 kb on - strand, within ECD_02727at 2871.092 kb on + strand, within ECD_02727at 2871.155 kb on + strand, within ECD_02727at 2871.155 kb on + strand, within ECD_02727at 2871.162 kb on + strand, within ECD_02727at 2871.162 kb on + strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.228 kb on + strandat 2871.228 kb on + strandat 2871.228 kb on + strandat 2871.229 kb on - strandat 2871.229 kb on - strandat 2871.229 kb on - strandat 2871.251 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.259 kb on - strandat 2871.259 kb on - strandat 2871.259 kb on - strandat 2871.312 kb on + strandat 2871.357 kb on + strand, within ECD_02728at 2871.388 kb on - strand, within ECD_02728at 2871.388 kb on - strand, within ECD_02728at 2871.410 kb on + strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.483 kb on - strand, within ECD_02728at 2871.503 kb on + strand, within ECD_02728at 2871.503 kb on + strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.506 kb on + strand, within ECD_02728at 2871.507 kb on - strand, within ECD_02728at 2871.549 kb on + strand, within ECD_02728at 2871.549 kb on + strand, within ECD_02728at 2871.550 kb on - strand, within ECD_02728at 2871.571 kb on + strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.599 kb on + strand, within ECD_02728at 2871.744 kb on + strand, within ECD_02729at 2871.765 kb on + strand, within ECD_02729at 2871.836 kb on + strand, within ECD_02729at 2871.837 kb on - strand, within ECD_02729at 2871.837 kb on - strand, within ECD_02729at 2871.882 kb on + strand, within ECD_02729at 2871.966 kb on - strandat 2871.966 kb on - strandat 2871.970 kb on + strandat 2871.970 kb on + strandat 2871.970 kb on + strandat 2871.971 kb on - strandat 2871.971 kb on - strandat 2871.971 kb on - strandat 2871.971 kb on - strandat 2872.001 kb on - strandat 2872.119 kb on + strandat 2872.119 kb on + strandat 2872.119 kb on + strandat 2872.119 kb on + strandat 2872.119 kb on + strandat 2872.128 kb on + strandat 2872.141 kb on + strandat 2872.144 kb on + strandat 2872.144 kb on + strandat 2872.144 kb on + strandat 2872.144 kb on + strandat 2872.144 kb on + strandat 2872.169 kb on + strandat 2872.169 kb on + strandat 2872.169 kb on + strandat 2872.169 kb on + strandat 2872.169 kb on + strandat 2872.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,869,766 + -3.0
2,869,767 - +0.3
2,869,767 - +2.5
2,869,822 - ECD_02726 0.13 -2.6
2,869,839 + ECD_02726 0.15 +2.6
2,869,842 + ECD_02726 0.15 -1.8
2,869,916 - ECD_02726 0.23 -2.6
2,870,091 - ECD_02726 0.43 +2.2
2,870,176 + ECD_02726 0.52 -0.3
2,870,176 + ECD_02726 0.52 -0.3
2,870,177 - ECD_02726 0.52 -2.1
2,870,177 - ECD_02726 0.52 +1.3
2,870,177 - ECD_02726 0.52 +1.0
2,870,177 - ECD_02726 0.52 +3.5
2,870,206 - ECD_02726 0.56 -1.8
2,870,226 + ECD_02726 0.58 -1.3
2,870,239 - ECD_02726 0.59 -2.3
2,870,242 - ECD_02726 0.60 -2.3
2,870,242 - ECD_02726 0.60 -1.7
2,870,266 - ECD_02726 0.62 -1.3
2,870,403 - ECD_02726 0.78 +1.4
2,870,403 - ECD_02726 0.78 -2.3
2,870,532 - -1.0
2,870,615 - -0.5
2,870,615 - -1.3
2,870,615 - -0.3
2,870,636 + -0.5
2,870,643 + +3.7
2,870,644 - -1.5
2,870,644 - +3.0
2,870,671 + -1.8
2,870,671 + +4.0
2,870,671 + -2.6
2,870,676 + -0.7
2,870,676 + -0.5
2,870,677 - -1.3
2,870,677 - +0.6
2,870,677 - +0.3
2,870,677 - +0.5
2,870,709 + +0.0
2,870,709 + -3.8
2,870,709 + -0.3
2,870,709 + +3.3
2,870,709 + +0.3
2,870,710 - -0.7
2,870,710 - +0.9
2,870,710 - +2.6
2,870,710 - +0.0
2,870,710 - -0.6
2,870,710 - +1.3
2,870,710 - -0.3
2,870,710 - +1.6
2,870,710 - +2.1
2,870,710 - +1.4
2,870,710 - +0.6
2,870,714 + +0.6
2,870,733 + +0.3
2,870,751 + +3.1
2,870,751 + +2.8
2,870,809 + ECD_02727 0.18 +1.1
2,870,809 + ECD_02727 0.18 +2.2
2,870,809 + ECD_02727 0.18 -0.3
2,870,809 + ECD_02727 0.18 +3.6
2,870,809 + ECD_02727 0.18 +0.8
2,870,809 + ECD_02727 0.18 +0.0
2,870,809 + ECD_02727 0.18 -0.3
2,870,809 + ECD_02727 0.18 +0.2
2,870,809 + ECD_02727 0.18 +1.3
2,870,809 + ECD_02727 0.18 -0.4
2,870,809 + ECD_02727 0.18 +0.2
2,870,809 + ECD_02727 0.18 +0.7
2,870,809 + ECD_02727 0.18 +1.0
2,870,810 - ECD_02727 0.18 -0.8
2,870,810 - ECD_02727 0.18 +0.3
2,870,810 - ECD_02727 0.18 +3.3
2,870,810 - ECD_02727 0.18 +0.9
2,870,810 - ECD_02727 0.18 +1.6
2,870,839 + ECD_02727 0.24 +0.6
2,870,850 + ECD_02727 0.26 +2.0
2,870,851 - ECD_02727 0.26 +3.4
2,870,967 + ECD_02727 0.48 -0.7
2,870,968 - ECD_02727 0.48 +1.2
2,871,092 + ECD_02727 0.72 +0.6
2,871,155 + ECD_02727 0.84 +1.0
2,871,155 + ECD_02727 0.84 -0.3
2,871,162 + ECD_02727 0.86 -1.7
2,871,162 + ECD_02727 0.86 +1.3
2,871,183 - ECD_02727 0.90 +3.6
2,871,183 - ECD_02727 0.90 +1.3
2,871,183 - ECD_02727 0.90 +0.7
2,871,228 + +3.0
2,871,228 + +3.2
2,871,228 + +3.7
2,871,229 - +3.3
2,871,229 - +4.1
2,871,229 - -1.8
2,871,251 + -1.1
2,871,258 + -1.6
2,871,258 + -0.7
2,871,258 + -1.2
2,871,258 + -0.5
2,871,259 - +4.0
2,871,259 - +1.1
2,871,259 - -1.1
2,871,312 + +4.2
2,871,357 + ECD_02728 0.20 +2.8
2,871,388 - ECD_02728 0.27 +2.4
2,871,388 - ECD_02728 0.27 +3.3
2,871,410 + ECD_02728 0.33 -3.0
2,871,411 - ECD_02728 0.33 -1.8
2,871,411 - ECD_02728 0.33 -0.3
2,871,411 - ECD_02728 0.33 -0.4
2,871,483 - ECD_02728 0.51 -2.6
2,871,503 + ECD_02728 0.56 -2.6
2,871,503 + ECD_02728 0.56 -1.2
2,871,504 - ECD_02728 0.56 -0.1
2,871,504 - ECD_02728 0.56 -2.7
2,871,504 - ECD_02728 0.56 -1.4
2,871,504 - ECD_02728 0.56 -1.7
2,871,506 + ECD_02728 0.56 +3.2
2,871,507 - ECD_02728 0.57 -1.4
2,871,549 + ECD_02728 0.67 -0.3
2,871,549 + ECD_02728 0.67 -1.8
2,871,550 - ECD_02728 0.67 -2.1
2,871,571 + ECD_02728 0.72 -0.9
2,871,572 - ECD_02728 0.73 -3.6
2,871,572 - ECD_02728 0.73 -1.1
2,871,572 - ECD_02728 0.73 -0.3
2,871,572 - ECD_02728 0.73 -0.5
2,871,572 - ECD_02728 0.73 -4.0
2,871,599 + ECD_02728 0.79 -2.4
2,871,744 + ECD_02729 0.30 -0.9
2,871,765 + ECD_02729 0.38 +2.2
2,871,836 + ECD_02729 0.64 -2.8
2,871,837 - ECD_02729 0.65 -1.1
2,871,837 - ECD_02729 0.65 -0.9
2,871,882 + ECD_02729 0.82 +2.7
2,871,966 - +3.7
2,871,966 - -0.1
2,871,970 + -1.2
2,871,970 + +3.0
2,871,970 + -2.2
2,871,971 - -1.8
2,871,971 - -3.1
2,871,971 - -2.3
2,871,971 - -0.8
2,872,001 - -1.1
2,872,119 + -1.1
2,872,119 + -1.3
2,872,119 + +2.6
2,872,119 + -1.0
2,872,119 + -2.3
2,872,128 + -0.7
2,872,141 + -0.8
2,872,144 + -4.2
2,872,144 + +0.3
2,872,144 + -1.3
2,872,144 + -2.8
2,872,144 + -1.3
2,872,169 + +0.0
2,872,169 + -1.7
2,872,169 + -0.5
2,872,169 + +3.0
2,872,169 + -1.4
2,872,169 + +0.0

Or see this region's nucleotide sequence