Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02468 and ECD_02469 overlap by 16 nucleotides ECD_02469 and ECD_02470 are separated by 131 nucleotides
ECD_02468: ECD_02468 - quinolinate synthase, L-aspartate oxidase (B protein) subunit, at 2,577,020 to 2,578,642
_02468
ECD_02469: ECD_02469 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 2,578,627 to 2,579,364
_02469
ECD_02470: ECD_02470 - ATP-dependent RNA helicase, at 2,579,496 to 2,580,830
_02470
Position (kb)
2578
2579
2580 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2577.651 kb on - strand, within ECD_02468 at 2577.739 kb on + strand, within ECD_02468 at 2577.764 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.944 kb on - strand, within ECD_02468 at 2577.965 kb on - strand, within ECD_02468 at 2578.004 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.131 kb on - strand, within ECD_02468 at 2578.161 kb on + strand, within ECD_02468 at 2578.211 kb on + strand, within ECD_02468 at 2578.246 kb on + strand, within ECD_02468 at 2578.270 kb on + strand, within ECD_02468 at 2578.271 kb on - strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.348 kb on - strand, within ECD_02468 at 2578.357 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.368 kb on - strand, within ECD_02468 at 2578.448 kb on + strand, within ECD_02468 at 2578.628 kb on + strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.632 kb on + strand at 2578.632 kb on + strand at 2578.633 kb on - strand at 2578.641 kb on - strand at 2578.641 kb on - strand at 2578.801 kb on + strand, within ECD_02469 at 2578.820 kb on - strand, within ECD_02469 at 2578.843 kb on - strand, within ECD_02469 at 2578.933 kb on - strand, within ECD_02469 at 2578.938 kb on + strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2579.012 kb on - strand, within ECD_02469 at 2579.024 kb on - strand, within ECD_02469 at 2579.230 kb on + strand, within ECD_02469 at 2579.265 kb on + strand, within ECD_02469 at 2579.352 kb on + strand at 2579.353 kb on - strand at 2579.353 kb on - strand at 2579.490 kb on + strand at 2579.801 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.842 kb on - strand, within ECD_02470 at 2579.844 kb on - strand, within ECD_02470 at 2579.913 kb on + strand, within ECD_02470 at 2579.913 kb on + strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.978 kb on + strand, within ECD_02470 at 2579.979 kb on - strand, within ECD_02470 at 2580.014 kb on + strand, within ECD_02470 at 2580.014 kb on + strand, within ECD_02470 at 2580.324 kb on + strand, within ECD_02470
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 2,577,651 - ECD_02468 0.39 -0.2 2,577,739 + ECD_02468 0.44 -0.0 2,577,764 + ECD_02468 0.46 -2.4 2,577,943 + ECD_02468 0.57 +0.3 2,577,943 + ECD_02468 0.57 -0.0 2,577,944 - ECD_02468 0.57 +0.3 2,577,965 - ECD_02468 0.58 -0.6 2,578,004 + ECD_02468 0.61 -0.4 2,578,073 + ECD_02468 0.65 +0.3 2,578,073 + ECD_02468 0.65 -0.6 2,578,073 + ECD_02468 0.65 +1.1 2,578,074 - ECD_02468 0.65 -0.8 2,578,074 - ECD_02468 0.65 -0.6 2,578,075 + ECD_02468 0.65 -1.0 2,578,075 + ECD_02468 0.65 -0.0 2,578,089 + ECD_02468 0.66 -1.1 2,578,089 + ECD_02468 0.66 -0.7 2,578,130 + ECD_02468 0.68 -1.1 2,578,130 + ECD_02468 0.68 -0.2 2,578,131 - ECD_02468 0.68 -0.2 2,578,161 + ECD_02468 0.70 +0.9 2,578,211 + ECD_02468 0.73 -0.2 2,578,246 + ECD_02468 0.76 +0.1 2,578,270 + ECD_02468 0.77 +0.8 2,578,271 - ECD_02468 0.77 +1.0 2,578,323 + ECD_02468 0.80 -0.6 2,578,323 + ECD_02468 0.80 -0.7 2,578,323 + ECD_02468 0.80 -1.3 2,578,333 + ECD_02468 0.81 -2.1 2,578,333 + ECD_02468 0.81 +1.0 2,578,333 + ECD_02468 0.81 -0.3 2,578,333 + ECD_02468 0.81 -0.1 2,578,347 + ECD_02468 0.82 +0.3 2,578,347 + ECD_02468 0.82 +0.1 2,578,347 + ECD_02468 0.82 +0.2 2,578,348 - ECD_02468 0.82 +0.2 2,578,357 + ECD_02468 0.82 -1.6 2,578,367 + ECD_02468 0.83 +3.1 2,578,367 + ECD_02468 0.83 +0.4 2,578,368 - ECD_02468 0.83 +0.1 2,578,448 + ECD_02468 0.88 -0.4 2,578,628 + -0.8 2,578,629 - -0.6 2,578,629 - -0.2 2,578,629 - -2.1 2,578,629 - -1.0 2,578,629 - -0.1 2,578,632 + +0.4 2,578,632 + +0.0 2,578,633 - -1.9 2,578,641 - +0.8 2,578,641 - -0.3 2,578,801 + ECD_02469 0.24 +0.8 2,578,820 - ECD_02469 0.26 -0.3 2,578,843 - ECD_02469 0.29 -0.9 2,578,933 - ECD_02469 0.41 +0.0 2,578,938 + ECD_02469 0.42 +0.4 2,578,939 - ECD_02469 0.42 +0.3 2,578,939 - ECD_02469 0.42 +0.1 2,578,991 + ECD_02469 0.49 -2.1 2,578,991 + ECD_02469 0.49 -0.6 2,578,992 - ECD_02469 0.49 +0.1 2,578,992 - ECD_02469 0.49 -0.1 2,578,992 - ECD_02469 0.49 +0.4 2,578,992 - ECD_02469 0.49 -0.1 2,579,012 - ECD_02469 0.52 -0.1 2,579,024 - ECD_02469 0.54 -0.8 2,579,230 + ECD_02469 0.82 +1.4 2,579,265 + ECD_02469 0.86 -0.9 2,579,352 + -0.8 2,579,353 - -0.6 2,579,353 - -0.6 2,579,490 + -0.6 2,579,801 + ECD_02470 0.23 -0.6 2,579,841 + ECD_02470 0.26 +0.0 2,579,841 + ECD_02470 0.26 -1.1 2,579,841 + ECD_02470 0.26 -1.9 2,579,842 - ECD_02470 0.26 -0.9 2,579,844 - ECD_02470 0.26 -1.4 2,579,913 + ECD_02470 0.31 -1.6 2,579,913 + ECD_02470 0.31 -0.6 2,579,914 - ECD_02470 0.31 -1.6 2,579,914 - ECD_02470 0.31 -0.3 2,579,914 - ECD_02470 0.31 -0.6 2,579,978 + ECD_02470 0.36 -0.4 2,579,979 - ECD_02470 0.36 -1.1 2,580,014 + ECD_02470 0.39 -2.4 2,580,014 + ECD_02470 0.39 -0.6 2,580,324 + ECD_02470 0.62 -1.6
Or see this region's nucleotide sequence