Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02104 and ECD_02105 are separated by 411 nucleotides ECD_02105 and ECD_02106 are separated by 180 nucleotides
ECD_02104: ECD_02104 - lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase, at 2,163,703 to 2,164,416
_02104
ECD_02105: ECD_02105 - murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase, at 2,164,828 to 2,165,394
_02105
ECD_02106: ECD_02106 - resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 2,165,575 to 2,167,131
_02106
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2163.972 kb on + strand, within ECD_02104 at 2163.981 kb on + strand, within ECD_02104 at 2164.001 kb on + strand, within ECD_02104 at 2164.346 kb on + strand at 2164.414 kb on + strand at 2164.693 kb on + strand at 2164.695 kb on + strand at 2164.791 kb on + strand at 2164.855 kb on + strand at 2164.855 kb on + strand at 2164.855 kb on + strand at 2164.857 kb on + strand at 2164.908 kb on + strand, within ECD_02105 at 2164.908 kb on + strand, within ECD_02105 at 2164.917 kb on + strand, within ECD_02105 at 2164.932 kb on + strand, within ECD_02105 at 2164.932 kb on + strand, within ECD_02105 at 2165.037 kb on + strand, within ECD_02105 at 2165.037 kb on + strand, within ECD_02105 at 2165.037 kb on + strand, within ECD_02105 at 2165.047 kb on + strand, within ECD_02105 at 2165.047 kb on + strand, within ECD_02105 at 2165.047 kb on + strand, within ECD_02105 at 2165.066 kb on + strand, within ECD_02105 at 2165.066 kb on + strand, within ECD_02105 at 2165.091 kb on + strand, within ECD_02105 at 2165.091 kb on + strand, within ECD_02105 at 2165.127 kb on + strand, within ECD_02105 at 2165.127 kb on + strand, within ECD_02105 at 2165.150 kb on + strand, within ECD_02105 at 2165.170 kb on + strand, within ECD_02105 at 2165.190 kb on + strand, within ECD_02105 at 2165.208 kb on + strand, within ECD_02105 at 2165.228 kb on + strand, within ECD_02105 at 2165.228 kb on + strand, within ECD_02105 at 2165.268 kb on + strand, within ECD_02105 at 2165.272 kb on + strand, within ECD_02105 at 2165.272 kb on + strand, within ECD_02105 at 2165.272 kb on + strand, within ECD_02105 at 2165.604 kb on + strand at 2165.617 kb on - strand at 2165.702 kb on - strand at 2165.792 kb on + strand, within ECD_02106 at 2165.792 kb on + strand, within ECD_02106 at 2165.793 kb on - strand, within ECD_02106 at 2165.841 kb on + strand, within ECD_02106 at 2166.155 kb on + strand, within ECD_02106 at 2166.253 kb on + strand, within ECD_02106 at 2166.353 kb on + strand, within ECD_02106 at 2166.358 kb on - strand, within ECD_02106
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 2,163,972 + ECD_02104 0.38 +0.8 2,163,981 + ECD_02104 0.39 -0.9 2,164,001 + ECD_02104 0.42 +0.9 2,164,346 + +0.4 2,164,414 + +2.4 2,164,693 + -1.5 2,164,695 + +0.4 2,164,791 + +0.2 2,164,855 + -3.0 2,164,855 + -1.1 2,164,855 + -2.1 2,164,857 + -2.0 2,164,908 + ECD_02105 0.14 +2.3 2,164,908 + ECD_02105 0.14 -2.2 2,164,917 + ECD_02105 0.16 -1.1 2,164,932 + ECD_02105 0.18 -1.8 2,164,932 + ECD_02105 0.18 -1.6 2,165,037 + ECD_02105 0.37 -1.3 2,165,037 + ECD_02105 0.37 -1.0 2,165,037 + ECD_02105 0.37 -1.3 2,165,047 + ECD_02105 0.39 -1.2 2,165,047 + ECD_02105 0.39 -2.1 2,165,047 + ECD_02105 0.39 -1.4 2,165,066 + ECD_02105 0.42 -0.9 2,165,066 + ECD_02105 0.42 -0.8 2,165,091 + ECD_02105 0.46 -1.0 2,165,091 + ECD_02105 0.46 +0.6 2,165,127 + ECD_02105 0.53 -1.4 2,165,127 + ECD_02105 0.53 -1.1 2,165,150 + ECD_02105 0.57 -0.8 2,165,170 + ECD_02105 0.60 -1.9 2,165,190 + ECD_02105 0.64 -0.5 2,165,208 + ECD_02105 0.67 -1.0 2,165,228 + ECD_02105 0.71 -0.9 2,165,228 + ECD_02105 0.71 -2.9 2,165,268 + ECD_02105 0.78 -1.4 2,165,272 + ECD_02105 0.78 -1.5 2,165,272 + ECD_02105 0.78 -2.1 2,165,272 + ECD_02105 0.78 -0.6 2,165,604 + +0.4 2,165,617 - +0.0 2,165,702 - -1.0 2,165,792 + ECD_02106 0.14 +0.9 2,165,792 + ECD_02106 0.14 -0.7 2,165,793 - ECD_02106 0.14 +1.9 2,165,841 + ECD_02106 0.17 -0.6 2,166,155 + ECD_02106 0.37 -1.6 2,166,253 + ECD_02106 0.44 -0.3 2,166,353 + ECD_02106 0.50 -0.1 2,166,358 - ECD_02106 0.50 -0.0
Or see this region's nucleotide sequence