Strain Fitness in Escherichia coli BL21 around ECD_02105

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02104 and ECD_02105 are separated by 411 nucleotidesECD_02105 and ECD_02106 are separated by 180 nucleotides ECD_02104: ECD_02104 - lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase, at 2,163,703 to 2,164,416 _02104 ECD_02105: ECD_02105 - murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase, at 2,164,828 to 2,165,394 _02105 ECD_02106: ECD_02106 - resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 2,165,575 to 2,167,131 _02106 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2163.972 kb on + strand, within ECD_02104at 2163.981 kb on + strand, within ECD_02104at 2164.001 kb on + strand, within ECD_02104at 2164.346 kb on + strandat 2164.414 kb on + strandat 2164.693 kb on + strandat 2164.695 kb on + strandat 2164.791 kb on + strandat 2164.855 kb on + strandat 2164.855 kb on + strandat 2164.855 kb on + strandat 2164.857 kb on + strandat 2164.908 kb on + strand, within ECD_02105at 2164.908 kb on + strand, within ECD_02105at 2164.917 kb on + strand, within ECD_02105at 2164.932 kb on + strand, within ECD_02105at 2164.932 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.066 kb on + strand, within ECD_02105at 2165.066 kb on + strand, within ECD_02105at 2165.091 kb on + strand, within ECD_02105at 2165.091 kb on + strand, within ECD_02105at 2165.127 kb on + strand, within ECD_02105at 2165.127 kb on + strand, within ECD_02105at 2165.150 kb on + strand, within ECD_02105at 2165.170 kb on + strand, within ECD_02105at 2165.190 kb on + strand, within ECD_02105at 2165.208 kb on + strand, within ECD_02105at 2165.228 kb on + strand, within ECD_02105at 2165.228 kb on + strand, within ECD_02105at 2165.268 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105at 2165.604 kb on + strandat 2165.617 kb on - strandat 2165.702 kb on - strandat 2165.792 kb on + strand, within ECD_02106at 2165.792 kb on + strand, within ECD_02106at 2165.793 kb on - strand, within ECD_02106at 2165.841 kb on + strand, within ECD_02106at 2166.155 kb on + strand, within ECD_02106at 2166.253 kb on + strand, within ECD_02106at 2166.353 kb on + strand, within ECD_02106at 2166.358 kb on - strand, within ECD_02106

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,163,972 + ECD_02104 0.38 +0.8
2,163,981 + ECD_02104 0.39 -0.9
2,164,001 + ECD_02104 0.42 +0.9
2,164,346 + +0.4
2,164,414 + +2.4
2,164,693 + -1.5
2,164,695 + +0.4
2,164,791 + +0.2
2,164,855 + -3.0
2,164,855 + -1.1
2,164,855 + -2.1
2,164,857 + -2.0
2,164,908 + ECD_02105 0.14 +2.3
2,164,908 + ECD_02105 0.14 -2.2
2,164,917 + ECD_02105 0.16 -1.1
2,164,932 + ECD_02105 0.18 -1.8
2,164,932 + ECD_02105 0.18 -1.6
2,165,037 + ECD_02105 0.37 -1.3
2,165,037 + ECD_02105 0.37 -1.0
2,165,037 + ECD_02105 0.37 -1.3
2,165,047 + ECD_02105 0.39 -1.2
2,165,047 + ECD_02105 0.39 -2.1
2,165,047 + ECD_02105 0.39 -1.4
2,165,066 + ECD_02105 0.42 -0.9
2,165,066 + ECD_02105 0.42 -0.8
2,165,091 + ECD_02105 0.46 -1.0
2,165,091 + ECD_02105 0.46 +0.6
2,165,127 + ECD_02105 0.53 -1.4
2,165,127 + ECD_02105 0.53 -1.1
2,165,150 + ECD_02105 0.57 -0.8
2,165,170 + ECD_02105 0.60 -1.9
2,165,190 + ECD_02105 0.64 -0.5
2,165,208 + ECD_02105 0.67 -1.0
2,165,228 + ECD_02105 0.71 -0.9
2,165,228 + ECD_02105 0.71 -2.9
2,165,268 + ECD_02105 0.78 -1.4
2,165,272 + ECD_02105 0.78 -1.5
2,165,272 + ECD_02105 0.78 -2.1
2,165,272 + ECD_02105 0.78 -0.6
2,165,604 + +0.4
2,165,617 - +0.0
2,165,702 - -1.0
2,165,792 + ECD_02106 0.14 +0.9
2,165,792 + ECD_02106 0.14 -0.7
2,165,793 - ECD_02106 0.14 +1.9
2,165,841 + ECD_02106 0.17 -0.6
2,166,155 + ECD_02106 0.37 -1.6
2,166,253 + ECD_02106 0.44 -0.3
2,166,353 + ECD_02106 0.50 -0.1
2,166,358 - ECD_02106 0.50 -0.0

Or see this region's nucleotide sequence