Strain Fitness in Escherichia coli BL21 around ECD_01490

Experiment: Bas51

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01487 and ECD_01488 overlap by 11 nucleotidesECD_01488 and ECD_01489 are separated by 219 nucleotidesECD_01489 and ECD_01490 are separated by 19 nucleotidesECD_01490 and ECD_01491 are separated by 31 nucleotidesECD_01491 and ECD_01492 are separated by 30 nucleotides ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886 _01487 ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196 _01488 ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850 _01489 ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253 _01490 ECD_01491: ECD_01491 - periplasmic mar operon regulator, at 1,569,285 to 1,569,503 _01491 ECD_01492: ECD_01492 - cysteine and O-acetyl-L-serine efflux system, at 1,569,534 to 1,570,433 _01492 Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1567.957 kb on - strand, within ECD_01488at 1567.967 kb on - strand, within ECD_01488at 1568.197 kb on - strandat 1568.291 kb on - strandat 1568.412 kb on + strandat 1568.412 kb on + strandat 1568.509 kb on + strand, within ECD_01489at 1568.577 kb on + strand, within ECD_01489at 1568.634 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.735 kb on + strand, within ECD_01489at 1569.038 kb on + strand, within ECD_01490at 1569.483 kb on + strandat 1569.484 kb on - strandat 1569.484 kb on - strandat 1569.486 kb on - strandat 1569.536 kb on - strandat 1569.587 kb on - strandat 1569.652 kb on - strand, within ECD_01492at 1569.719 kb on - strand, within ECD_01492at 1569.804 kb on - strand, within ECD_01492at 1569.975 kb on - strand, within ECD_01492

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
remove
1,567,957 - ECD_01488 0.25 -1.1
1,567,967 - ECD_01488 0.28 -2.0
1,568,197 - -0.5
1,568,291 - +0.6
1,568,412 + +3.3
1,568,412 + +1.9
1,568,509 + ECD_01489 0.21 +3.6
1,568,577 + ECD_01489 0.37 +2.1
1,568,634 + ECD_01489 0.50 +2.7
1,568,715 + ECD_01489 0.69 +3.6
1,568,715 + ECD_01489 0.69 +2.9
1,568,735 + ECD_01489 0.73 +2.7
1,569,038 + ECD_01490 0.44 -0.6
1,569,483 + -0.3
1,569,484 - -0.0
1,569,484 - +0.1
1,569,486 - +0.0
1,569,536 - -0.3
1,569,587 - +1.1
1,569,652 - ECD_01492 0.13 -0.0
1,569,719 - ECD_01492 0.21 -1.1
1,569,804 - ECD_01492 0.30 -0.5
1,569,975 - ECD_01492 0.49 -0.2

Or see this region's nucleotide sequence