Strain Fitness in Escherichia coli BL21 around ECD_00702

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00700 and ECD_00701 are separated by 34 nucleotidesECD_00701 and ECD_00702 are separated by 9 nucleotidesECD_00702 and ECD_t00015 are separated by 164 nucleotidesECD_t00015 and ECD_t00016 are separated by 135 nucleotidesECD_t00016 and ECD_t00017 are separated by 2 nucleotidesECD_t00017 and ECD_t00018 are separated by 51 nucleotidesECD_t00018 and ECD_t00019 are separated by 3 nucleotidesECD_t00019 and ECD_t00020 are separated by 146 nucleotides ECD_00700: ECD_00700 - periplasmic protein, at 736,401 to 737,693 _00700 ECD_00701: ECD_00701 - peptidoglycan-associated outer membrane lipoprotein, at 737,728 to 738,249 _00701 ECD_00702: ECD_00702 - periplasmic TolA-binding protein, at 738,259 to 739,050 _00702 ECD_t00015: ECD_t00015 - tRNA-Lys, at 739,215 to 739,290 _t00015 ECD_t00016: ECD_t00016 - tRNA-Val, at 739,426 to 739,501 _t00016 ECD_t00017: ECD_t00017 - tRNA-Lys, at 739,504 to 739,579 _t00017 ECD_t00018: ECD_t00018 - tRNA-Val, at 739,631 to 739,706 _t00018 ECD_t00019: ECD_t00019 - tRNA-Lys, at 739,710 to 739,785 _t00019 ECD_t00020: ECD_t00020 - tRNA-Lys, at 739,932 to 740,007 _t00020 Position (kb) 738 739 740Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 738.244 kb on + strandat 738.645 kb on + strand, within ECD_00702at 738.695 kb on - strand, within ECD_00702at 738.790 kb on + strand, within ECD_00702at 738.808 kb on + strand, within ECD_00702at 738.808 kb on + strand, within ECD_00702at 738.829 kb on + strand, within ECD_00702at 738.840 kb on + strand, within ECD_00702at 738.862 kb on + strand, within ECD_00702at 738.875 kb on + strand, within ECD_00702at 738.976 kb on + strandat 738.997 kb on + strandat 738.998 kb on - strandat 739.048 kb on + strandat 739.048 kb on + strandat 739.048 kb on + strandat 739.079 kb on - strandat 739.164 kb on + strandat 739.164 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.419 kb on + strandat 739.419 kb on + strandat 739.539 kb on + strand, within ECD_t00017at 739.581 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.605 kb on + strandat 739.605 kb on + strandat 739.612 kb on + strandat 739.612 kb on + strandat 739.612 kb on + strandat 739.745 kb on + strand, within ECD_t00019at 739.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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738,244 + +1.2
738,645 + ECD_00702 0.49 -0.7
738,695 - ECD_00702 0.55 -1.1
738,790 + ECD_00702 0.67 +0.1
738,808 + ECD_00702 0.69 -1.8
738,808 + ECD_00702 0.69 -1.1
738,829 + ECD_00702 0.72 -0.3
738,840 + ECD_00702 0.73 -0.2
738,862 + ECD_00702 0.76 -1.6
738,875 + ECD_00702 0.78 +0.0
738,976 + +0.2
738,997 + -0.1
738,998 - -0.8
739,048 + -0.8
739,048 + +0.3
739,048 + -0.2
739,079 - +0.9
739,164 + -0.5
739,164 + -4.2
739,397 + -1.9
739,397 + +3.4
739,397 + -1.3
739,397 + -1.2
739,397 + -0.8
739,397 + -0.5
739,397 + -1.4
739,397 + -1.6
739,401 + -3.5
739,401 + -2.2
739,401 + -1.7
739,401 + -0.1
739,401 + -2.0
739,401 + -0.1
739,401 + -1.1
739,407 + -0.8
739,407 + -1.1
739,407 + -2.9
739,407 + -1.4
739,419 + -1.2
739,419 + -1.0
739,539 + ECD_t00017 0.46 -0.5
739,581 + -0.1
739,585 + -1.9
739,585 + -1.2
739,585 + +1.5
739,585 + -0.3
739,605 + -1.0
739,605 + -0.9
739,612 + -1.1
739,612 + -0.0
739,612 + -1.6
739,745 + ECD_t00019 0.46 +0.5
739,809 + -2.0

Or see this region's nucleotide sequence