Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00649 and ECD_00650 are separated by 122 nucleotides ECD_00650 and ECD_00651 are separated by 215 nucleotides ECD_00651 and ECD_00652 overlap by 4 nucleotides
ECD_00649: ECD_00649 - ornithine decarboxylase isozyme, inducible, at 678,136 to 680,334
_00649
ECD_00650: ECD_00650 - hypothetical protein, at 680,457 to 680,714
_00650
ECD_00651: ECD_00651 - response regulator in two-component regulatory system with KdpD, at 680,930 to 681,607
_00651
ECD_00652: ECD_00652 - fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein, at 681,604 to 684,288
_00652
Position (kb) 680
681
682 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 679.969 kb on - strand, within ECD_00649 at 679.983 kb on - strand, within ECD_00649 at 681.308 kb on - strand, within ECD_00651 at 681.315 kb on + strand, within ECD_00651 at 681.461 kb on - strand, within ECD_00651 at 681.476 kb on - strand, within ECD_00651 at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.795 kb on + strand at 681.860 kb on - strand at 682.126 kb on + strand, within ECD_00652 at 682.264 kb on + strand, within ECD_00652 at 682.265 kb on - strand, within ECD_00652 at 682.386 kb on + strand, within ECD_00652 at 682.463 kb on + strand, within ECD_00652
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 679,969 - ECD_00649 0.83 -0.2 679,983 - ECD_00649 0.84 -0.6 681,308 - ECD_00651 0.56 -0.5 681,315 + ECD_00651 0.57 -0.5 681,461 - ECD_00651 0.78 +5.7 681,476 - ECD_00651 0.81 -0.1 681,716 - -0.3 681,716 - -0.2 681,716 - +0.7 681,716 - +2.5 681,716 - +0.2 681,795 + -0.9 681,860 - +0.9 682,126 + ECD_00652 0.19 +1.5 682,264 + ECD_00652 0.25 -0.1 682,265 - ECD_00652 0.25 +0.4 682,386 + ECD_00652 0.29 +0.3 682,463 + ECD_00652 0.32 -0.6
Or see this region's nucleotide sequence