Strain Fitness in Escherichia coli BL21 around ECD_00429

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00428 and ECD_00429 are separated by 132 nucleotidesECD_00429 and ECD_00430 are separated by 237 nucleotides ECD_00428: ECD_00428 - inosine/guanosine kinase, at 469,171 to 470,475 _00428 ECD_00429: ECD_00429 - inner membrane putative NAD(P)-binding transporter, at 470,608 to 472,284 _00429 ECD_00430: ECD_00430 - putative fosmidomycin efflux system protein, at 472,522 to 473,742 _00430 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 469.629 kb on + strand, within ECD_00428at 469.656 kb on + strand, within ECD_00428at 469.656 kb on + strand, within ECD_00428at 469.657 kb on - strand, within ECD_00428at 469.657 kb on - strand, within ECD_00428at 469.753 kb on + strand, within ECD_00428at 469.825 kb on + strand, within ECD_00428at 469.832 kb on + strand, within ECD_00428at 469.832 kb on + strand, within ECD_00428at 469.857 kb on + strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.042 kb on - strand, within ECD_00428at 470.177 kb on + strand, within ECD_00428at 470.197 kb on + strand, within ECD_00428at 470.198 kb on - strand, within ECD_00428at 470.288 kb on - strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.364 kb on + strandat 470.365 kb on - strandat 470.365 kb on - strandat 470.365 kb on - strandat 470.368 kb on + strandat 470.368 kb on + strandat 470.368 kb on + strandat 470.369 kb on - strandat 470.369 kb on - strandat 470.386 kb on + strandat 470.387 kb on - strandat 470.461 kb on + strandat 470.474 kb on - strandat 470.500 kb on + strandat 470.563 kb on - strandat 470.662 kb on - strandat 470.717 kb on + strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.751 kb on + strandat 470.752 kb on - strandat 470.752 kb on - strandat 471.288 kb on + strand, within ECD_00429at 471.289 kb on - strand, within ECD_00429at 471.351 kb on + strand, within ECD_00429at 471.352 kb on - strand, within ECD_00429at 471.466 kb on - strand, within ECD_00429at 471.668 kb on - strand, within ECD_00429at 471.678 kb on + strand, within ECD_00429at 471.679 kb on - strand, within ECD_00429at 471.679 kb on - strand, within ECD_00429at 471.890 kb on - strand, within ECD_00429at 471.944 kb on - strand, within ECD_00429at 472.197 kb on + strandat 472.198 kb on - strandat 472.198 kb on - strandat 472.198 kb on - strandat 472.202 kb on - strandat 472.206 kb on + strandat 472.206 kb on + strandat 472.627 kb on - strandat 472.781 kb on - strand, within ECD_00430at 472.964 kb on - strand, within ECD_00430at 473.018 kb on + strand, within ECD_00430at 473.065 kb on + strand, within ECD_00430at 473.066 kb on - strand, within ECD_00430

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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469,629 + ECD_00428 0.35 -1.0
469,656 + ECD_00428 0.37 -0.2
469,656 + ECD_00428 0.37 -0.7
469,657 - ECD_00428 0.37 +0.2
469,657 - ECD_00428 0.37 +0.2
469,753 + ECD_00428 0.45 +3.1
469,825 + ECD_00428 0.50 -0.4
469,832 + ECD_00428 0.51 -0.9
469,832 + ECD_00428 0.51 +0.7
469,857 + ECD_00428 0.53 -0.6
469,858 - ECD_00428 0.53 -0.0
469,858 - ECD_00428 0.53 +2.2
469,858 - ECD_00428 0.53 -0.9
470,041 + ECD_00428 0.67 -1.8
470,041 + ECD_00428 0.67 +1.6
470,041 + ECD_00428 0.67 -0.7
470,041 + ECD_00428 0.67 +0.2
470,042 - ECD_00428 0.67 -0.9
470,177 + ECD_00428 0.77 -0.2
470,197 + ECD_00428 0.79 -0.1
470,198 - ECD_00428 0.79 -0.0
470,288 - ECD_00428 0.86 -1.4
470,341 + ECD_00428 0.90 -0.5
470,341 + ECD_00428 0.90 -0.1
470,341 + ECD_00428 0.90 +0.4
470,342 - ECD_00428 0.90 +1.4
470,342 - ECD_00428 0.90 -1.8
470,342 - ECD_00428 0.90 +0.1
470,364 + -1.4
470,365 - +0.3
470,365 - -0.9
470,365 - +1.0
470,368 + -0.3
470,368 + -1.1
470,368 + -1.8
470,369 - -0.5
470,369 - -1.0
470,386 + +0.3
470,387 - -0.1
470,461 + +0.6
470,474 - -0.4
470,500 + -1.9
470,563 - -0.3
470,662 - +0.3
470,717 + +0.2
470,718 - +0.2
470,718 - -0.8
470,718 - -1.0
470,718 - -0.3
470,751 + +1.5
470,752 - -0.7
470,752 - -0.0
471,288 + ECD_00429 0.41 -0.8
471,289 - ECD_00429 0.41 +0.5
471,351 + ECD_00429 0.44 +0.8
471,352 - ECD_00429 0.44 -1.0
471,466 - ECD_00429 0.51 +3.3
471,668 - ECD_00429 0.63 -0.2
471,678 + ECD_00429 0.64 +0.4
471,679 - ECD_00429 0.64 +0.6
471,679 - ECD_00429 0.64 +0.3
471,890 - ECD_00429 0.76 -0.2
471,944 - ECD_00429 0.80 +0.1
472,197 + +0.2
472,198 - +0.4
472,198 - -0.4
472,198 - +1.0
472,202 - -0.1
472,206 + -1.6
472,206 + +0.1
472,627 - +1.1
472,781 - ECD_00430 0.21 -0.2
472,964 - ECD_00430 0.36 +0.6
473,018 + ECD_00430 0.41 +1.0
473,065 + ECD_00430 0.44 +0.3
473,066 - ECD_00430 0.45 +0.1

Or see this region's nucleotide sequence