Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00297 and ECD_00298 are separated by 51 nucleotides ECD_00298 and ECD_00299 are separated by 122 nucleotides
ECD_00297: ECD_00297 - lactose permease, at 331,461 to 332,714
_00297
ECD_00298: ECD_00298 - beta-D-galactosidase, at 332,766 to 335,840
_00298
ECD_00299: ECD_00299 - lactose-inducible lac operon transcriptional repressor, at 335,963 to 337,045
_00299
Position (kb) 332
333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 331.808 kb on + strand, within ECD_00297 at 331.808 kb on + strand, within ECD_00297 at 331.821 kb on - strand, within ECD_00297 at 331.824 kb on - strand, within ECD_00297 at 331.902 kb on - strand, within ECD_00297 at 331.974 kb on - strand, within ECD_00297 at 332.008 kb on + strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.220 kb on - strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297 at 332.710 kb on + strand at 333.052 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.138 kb on + strand, within ECD_00298 at 333.288 kb on - strand, within ECD_00298 at 333.291 kb on + strand, within ECD_00298 at 333.353 kb on + strand, within ECD_00298 at 333.354 kb on - strand, within ECD_00298 at 333.428 kb on + strand, within ECD_00298 at 333.454 kb on - strand, within ECD_00298 at 333.738 kb on + strand, within ECD_00298 at 333.745 kb on - strand, within ECD_00298 at 333.809 kb on + strand, within ECD_00298 at 333.858 kb on - strand, within ECD_00298 at 334.105 kb on + strand, within ECD_00298 at 334.106 kb on - strand, within ECD_00298 at 334.331 kb on - strand, within ECD_00298 at 334.347 kb on - strand, within ECD_00298 at 334.381 kb on + strand, within ECD_00298 at 334.615 kb on + strand, within ECD_00298 at 334.615 kb on + strand, within ECD_00298 at 334.615 kb on + strand, within ECD_00298 at 334.615 kb on + strand, within ECD_00298 at 334.615 kb on + strand, within ECD_00298 at 334.616 kb on - strand, within ECD_00298 at 335.077 kb on - strand, within ECD_00298 at 335.190 kb on - strand, within ECD_00298 at 335.840 kb on + strand at 335.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 331,808 + ECD_00297 0.28 -1.4 331,808 + ECD_00297 0.28 +0.6 331,821 - ECD_00297 0.29 -0.1 331,824 - ECD_00297 0.29 +0.9 331,902 - ECD_00297 0.35 +0.3 331,974 - ECD_00297 0.41 -1.3 332,008 + ECD_00297 0.44 +1.9 332,009 - ECD_00297 0.44 -0.3 332,009 - ECD_00297 0.44 -0.5 332,220 - ECD_00297 0.61 -0.5 332,381 + ECD_00297 0.73 -1.4 332,381 + ECD_00297 0.73 -0.8 332,710 + -1.9 333,052 + -0.4 333,061 + +0.8 333,061 + -0.7 333,061 + -1.1 333,061 + +0.3 333,062 - +2.9 333,062 - -1.4 333,062 - +0.2 333,062 - +0.0 333,062 - +0.6 333,062 - +1.5 333,062 - -0.8 333,062 - +0.0 333,138 + ECD_00298 0.12 -1.0 333,288 - ECD_00298 0.17 -0.6 333,291 + ECD_00298 0.17 +0.9 333,353 + ECD_00298 0.19 +0.1 333,354 - ECD_00298 0.19 +0.2 333,428 + ECD_00298 0.22 +0.2 333,454 - ECD_00298 0.22 +0.1 333,738 + ECD_00298 0.32 -0.4 333,745 - ECD_00298 0.32 -1.4 333,809 + ECD_00298 0.34 -0.5 333,858 - ECD_00298 0.36 -1.7 334,105 + ECD_00298 0.44 -0.4 334,106 - ECD_00298 0.44 -1.4 334,331 - ECD_00298 0.51 -0.6 334,347 - ECD_00298 0.51 +0.1 334,381 + ECD_00298 0.53 -0.7 334,615 + ECD_00298 0.60 +1.1 334,615 + ECD_00298 0.60 +0.6 334,615 + ECD_00298 0.60 -1.4 334,615 + ECD_00298 0.60 +0.0 334,615 + ECD_00298 0.60 +0.2 334,616 - ECD_00298 0.60 -0.1 335,077 - ECD_00298 0.75 +0.4 335,190 - ECD_00298 0.79 -0.3 335,840 + +1.3 335,890 - -0.6
Or see this region's nucleotide sequence