Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21645 and ABIE41_RS21650 are separated by 59 nucleotides ABIE41_RS21650 and ABIE41_RS21655 are separated by 129 nucleotides ABIE41_RS21655 and ABIE41_RS21660 are separated by 109 nucleotides
ABIE41_RS21645: ABIE41_RS21645 - ABC transporter ATP-binding protein, at 4,447,114 to 4,448,268
_RS21645
ABIE41_RS21650: ABIE41_RS21650 - polyamine ABC transporter substrate-binding protein, at 4,448,328 to 4,449,440
_RS21650
ABIE41_RS21655: ABIE41_RS21655 - DUF3750 domain-containing protein, at 4,449,570 to 4,450,307
_RS21655
ABIE41_RS21660: ABIE41_RS21660 - cystathionine gamma-synthase family protein, at 4,450,417 to 4,451,700
_RS21660
Position (kb) 4448
4449
4450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4447.541 kb on + strand, within ABIE41_RS21645 at 4447.541 kb on + strand, within ABIE41_RS21645 at 4447.542 kb on - strand, within ABIE41_RS21645 at 4447.542 kb on - strand, within ABIE41_RS21645 at 4447.542 kb on - strand, within ABIE41_RS21645 at 4447.955 kb on + strand, within ABIE41_RS21645 at 4447.955 kb on + strand, within ABIE41_RS21645 at 4448.367 kb on + strand at 4448.390 kb on - strand at 4448.434 kb on + strand at 4448.434 kb on + strand at 4448.435 kb on - strand at 4448.435 kb on - strand at 4448.435 kb on - strand at 4448.645 kb on - strand, within ABIE41_RS21650 at 4448.729 kb on + strand, within ABIE41_RS21650 at 4448.729 kb on + strand, within ABIE41_RS21650 at 4448.730 kb on - strand, within ABIE41_RS21650 at 4448.730 kb on - strand, within ABIE41_RS21650 at 4448.756 kb on - strand, within ABIE41_RS21650 at 4448.860 kb on + strand, within ABIE41_RS21650 at 4448.861 kb on - strand, within ABIE41_RS21650 at 4449.013 kb on + strand, within ABIE41_RS21650 at 4449.040 kb on + strand, within ABIE41_RS21650 at 4449.040 kb on + strand, within ABIE41_RS21650 at 4449.040 kb on + strand, within ABIE41_RS21650 at 4449.040 kb on + strand, within ABIE41_RS21650 at 4449.041 kb on - strand, within ABIE41_RS21650 at 4449.041 kb on - strand, within ABIE41_RS21650 at 4449.041 kb on - strand, within ABIE41_RS21650 at 4449.041 kb on - strand, within ABIE41_RS21650 at 4449.041 kb on - strand, within ABIE41_RS21650 at 4449.070 kb on + strand, within ABIE41_RS21650 at 4449.070 kb on + strand, within ABIE41_RS21650 at 4449.070 kb on + strand, within ABIE41_RS21650 at 4449.071 kb on - strand, within ABIE41_RS21650 at 4449.146 kb on - strand, within ABIE41_RS21650 at 4449.146 kb on - strand, within ABIE41_RS21650 at 4449.262 kb on + strand, within ABIE41_RS21650 at 4449.319 kb on + strand, within ABIE41_RS21650 at 4449.319 kb on + strand, within ABIE41_RS21650 at 4449.334 kb on + strand at 4449.335 kb on - strand at 4449.335 kb on - strand at 4449.335 kb on - strand at 4449.335 kb on - strand at 4449.335 kb on - strand at 4449.480 kb on + strand at 4449.480 kb on + strand at 4449.481 kb on - strand at 4449.560 kb on + strand at 4449.560 kb on + strand at 4449.561 kb on - strand at 4449.561 kb on - strand at 4449.828 kb on + strand, within ABIE41_RS21655 at 4449.828 kb on + strand, within ABIE41_RS21655 at 4449.829 kb on - strand, within ABIE41_RS21655 at 4449.829 kb on - strand, within ABIE41_RS21655 at 4449.830 kb on + strand, within ABIE41_RS21655 at 4449.831 kb on - strand, within ABIE41_RS21655 at 4449.988 kb on - strand, within ABIE41_RS21655 at 4449.991 kb on + strand, within ABIE41_RS21655 at 4449.993 kb on + strand, within ABIE41_RS21655 at 4449.994 kb on - strand, within ABIE41_RS21655 at 4449.994 kb on - strand, within ABIE41_RS21655 at 4450.011 kb on + strand, within ABIE41_RS21655 at 4450.011 kb on + strand, within ABIE41_RS21655 at 4450.012 kb on - strand, within ABIE41_RS21655 at 4450.306 kb on - strand at 4450.310 kb on + strand at 4450.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,447,541 + ABIE41_RS21645 0.37 -0.3 4,447,541 + ABIE41_RS21645 0.37 +1.8 4,447,542 - ABIE41_RS21645 0.37 +1.1 4,447,542 - ABIE41_RS21645 0.37 +1.8 4,447,542 - ABIE41_RS21645 0.37 +0.9 4,447,955 + ABIE41_RS21645 0.73 -0.1 4,447,955 + ABIE41_RS21645 0.73 +0.9 4,448,367 + -0.3 4,448,390 - -0.6 4,448,434 + -0.7 4,448,434 + -2.2 4,448,435 - -0.2 4,448,435 - -0.6 4,448,435 - -0.7 4,448,645 - ABIE41_RS21650 0.28 -0.5 4,448,729 + ABIE41_RS21650 0.36 +0.4 4,448,729 + ABIE41_RS21650 0.36 +0.2 4,448,730 - ABIE41_RS21650 0.36 -1.0 4,448,730 - ABIE41_RS21650 0.36 -1.2 4,448,756 - ABIE41_RS21650 0.38 +0.2 4,448,860 + ABIE41_RS21650 0.48 -0.9 4,448,861 - ABIE41_RS21650 0.48 -1.6 4,449,013 + ABIE41_RS21650 0.62 +0.2 4,449,040 + ABIE41_RS21650 0.64 -0.5 4,449,040 + ABIE41_RS21650 0.64 +0.4 4,449,040 + ABIE41_RS21650 0.64 -0.7 4,449,040 + ABIE41_RS21650 0.64 -2.0 4,449,041 - ABIE41_RS21650 0.64 -0.5 4,449,041 - ABIE41_RS21650 0.64 -1.1 4,449,041 - ABIE41_RS21650 0.64 -0.1 4,449,041 - ABIE41_RS21650 0.64 -1.4 4,449,041 - ABIE41_RS21650 0.64 +0.1 4,449,070 + ABIE41_RS21650 0.67 -1.7 4,449,070 + ABIE41_RS21650 0.67 +0.1 4,449,070 + ABIE41_RS21650 0.67 +0.6 4,449,071 - ABIE41_RS21650 0.67 +2.4 4,449,146 - ABIE41_RS21650 0.73 -0.7 4,449,146 - ABIE41_RS21650 0.73 -0.3 4,449,262 + ABIE41_RS21650 0.84 +0.6 4,449,319 + ABIE41_RS21650 0.89 +0.4 4,449,319 + ABIE41_RS21650 0.89 -0.3 4,449,334 + -0.4 4,449,335 - +0.5 4,449,335 - -0.4 4,449,335 - +0.1 4,449,335 - -0.9 4,449,335 - -0.0 4,449,480 + +1.5 4,449,480 + +0.4 4,449,481 - -0.7 4,449,560 + -0.2 4,449,560 + +0.0 4,449,561 - -0.7 4,449,561 - +0.0 4,449,828 + ABIE41_RS21655 0.35 -0.2 4,449,828 + ABIE41_RS21655 0.35 +1.6 4,449,829 - ABIE41_RS21655 0.35 -1.9 4,449,829 - ABIE41_RS21655 0.35 +0.4 4,449,830 + ABIE41_RS21655 0.35 -0.8 4,449,831 - ABIE41_RS21655 0.35 +0.3 4,449,988 - ABIE41_RS21655 0.57 -0.4 4,449,991 + ABIE41_RS21655 0.57 +0.2 4,449,993 + ABIE41_RS21655 0.57 -1.0 4,449,994 - ABIE41_RS21655 0.57 -0.2 4,449,994 - ABIE41_RS21655 0.57 -0.1 4,450,011 + ABIE41_RS21655 0.60 +1.9 4,450,011 + ABIE41_RS21655 0.60 +0.6 4,450,012 - ABIE41_RS21655 0.60 -0.4 4,450,306 - +1.2 4,450,310 + +1.2 4,450,311 - +1.1
Or see this region's nucleotide sequence