Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20015

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20010 and ABIE41_RS20015 are separated by 113 nucleotidesABIE41_RS20015 and ABIE41_RS20020 are separated by 80 nucleotides ABIE41_RS20010: ABIE41_RS20010 - LysR family transcriptional regulator, at 4,112,456 to 4,113,385 _RS20010 ABIE41_RS20015: ABIE41_RS20015 - shikimate dehydrogenase, at 4,113,499 to 4,114,383 _RS20015 ABIE41_RS20020: ABIE41_RS20020 - ABC transporter substrate-binding protein, at 4,114,464 to 4,115,600 _RS20020 Position (kb) 4113 4114 4115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4112.621 kb on + strand, within ABIE41_RS20010at 4112.622 kb on - strand, within ABIE41_RS20010at 4112.673 kb on - strand, within ABIE41_RS20010at 4112.696 kb on + strand, within ABIE41_RS20010at 4112.861 kb on + strand, within ABIE41_RS20010at 4112.862 kb on - strand, within ABIE41_RS20010at 4112.901 kb on - strand, within ABIE41_RS20010at 4112.901 kb on - strand, within ABIE41_RS20010at 4112.901 kb on - strand, within ABIE41_RS20010at 4113.056 kb on + strand, within ABIE41_RS20010at 4113.057 kb on - strand, within ABIE41_RS20010at 4113.102 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.258 kb on - strand, within ABIE41_RS20010at 4113.293 kb on + strandat 4113.399 kb on + strandat 4113.465 kb on + strandat 4113.466 kb on - strandat 4113.628 kb on + strand, within ABIE41_RS20015at 4113.628 kb on + strand, within ABIE41_RS20015at 4113.628 kb on + strand, within ABIE41_RS20015at 4113.629 kb on - strand, within ABIE41_RS20015at 4113.629 kb on - strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.730 kb on + strand, within ABIE41_RS20015at 4113.730 kb on + strand, within ABIE41_RS20015at 4113.806 kb on + strand, within ABIE41_RS20015at 4113.807 kb on - strand, within ABIE41_RS20015at 4113.807 kb on - strand, within ABIE41_RS20015at 4113.865 kb on + strand, within ABIE41_RS20015at 4113.982 kb on + strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4114.157 kb on + strand, within ABIE41_RS20015at 4114.185 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.187 kb on - strand, within ABIE41_RS20015at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.675 kb on - strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.917 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.125 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.370 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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4,112,621 + ABIE41_RS20010 0.18 -0.3
4,112,622 - ABIE41_RS20010 0.18 -0.1
4,112,673 - ABIE41_RS20010 0.23 -0.4
4,112,696 + ABIE41_RS20010 0.26 +0.3
4,112,861 + ABIE41_RS20010 0.44 -0.1
4,112,862 - ABIE41_RS20010 0.44 -1.2
4,112,901 - ABIE41_RS20010 0.48 -0.2
4,112,901 - ABIE41_RS20010 0.48 -0.1
4,112,901 - ABIE41_RS20010 0.48 -0.3
4,113,056 + ABIE41_RS20010 0.65 -0.3
4,113,057 - ABIE41_RS20010 0.65 +0.1
4,113,102 - ABIE41_RS20010 0.69 +1.6
4,113,258 - ABIE41_RS20010 0.86 +0.4
4,113,258 - ABIE41_RS20010 0.86 +0.2
4,113,258 - ABIE41_RS20010 0.86 -0.2
4,113,258 - ABIE41_RS20010 0.86 -0.0
4,113,258 - ABIE41_RS20010 0.86 +0.2
4,113,258 - ABIE41_RS20010 0.86 -2.4
4,113,258 - ABIE41_RS20010 0.86 -0.1
4,113,293 + -0.5
4,113,399 + +2.0
4,113,465 + +0.1
4,113,466 - +0.0
4,113,628 + ABIE41_RS20015 0.15 -0.6
4,113,628 + ABIE41_RS20015 0.15 +0.7
4,113,628 + ABIE41_RS20015 0.15 +0.2
4,113,629 - ABIE41_RS20015 0.15 +0.6
4,113,629 - ABIE41_RS20015 0.15 +0.2
4,113,724 + ABIE41_RS20015 0.25 +1.5
4,113,724 + ABIE41_RS20015 0.25 +1.1
4,113,724 + ABIE41_RS20015 0.25 -0.5
4,113,724 + ABIE41_RS20015 0.25 -0.0
4,113,724 + ABIE41_RS20015 0.25 +1.7
4,113,725 - ABIE41_RS20015 0.26 -0.5
4,113,725 - ABIE41_RS20015 0.26 +1.8
4,113,725 - ABIE41_RS20015 0.26 -0.1
4,113,725 - ABIE41_RS20015 0.26 +0.3
4,113,730 + ABIE41_RS20015 0.26 +0.2
4,113,730 + ABIE41_RS20015 0.26 -0.2
4,113,806 + ABIE41_RS20015 0.35 +0.1
4,113,807 - ABIE41_RS20015 0.35 +0.4
4,113,807 - ABIE41_RS20015 0.35 -0.2
4,113,865 + ABIE41_RS20015 0.41 +0.2
4,113,982 + ABIE41_RS20015 0.55 -0.2
4,113,983 - ABIE41_RS20015 0.55 -1.0
4,113,983 - ABIE41_RS20015 0.55 +0.1
4,113,983 - ABIE41_RS20015 0.55 -1.2
4,113,983 - ABIE41_RS20015 0.55 +1.8
4,114,157 + ABIE41_RS20015 0.74 -0.2
4,114,185 + ABIE41_RS20015 0.78 -0.2
4,114,186 + ABIE41_RS20015 0.78 +0.2
4,114,186 + ABIE41_RS20015 0.78 -0.0
4,114,186 + ABIE41_RS20015 0.78 +0.4
4,114,186 + ABIE41_RS20015 0.78 +0.9
4,114,186 + ABIE41_RS20015 0.78 -0.4
4,114,187 - ABIE41_RS20015 0.78 -0.3
4,114,674 + ABIE41_RS20020 0.18 +0.4
4,114,674 + ABIE41_RS20020 0.18 +1.8
4,114,674 + ABIE41_RS20020 0.18 -0.4
4,114,675 - ABIE41_RS20020 0.19 -0.5
4,114,740 + ABIE41_RS20020 0.24 -0.7
4,114,740 + ABIE41_RS20020 0.24 -2.7
4,114,740 + ABIE41_RS20020 0.24 -0.5
4,114,741 - ABIE41_RS20020 0.24 -1.1
4,114,741 - ABIE41_RS20020 0.24 +0.8
4,114,741 - ABIE41_RS20020 0.24 -1.4
4,114,741 - ABIE41_RS20020 0.24 -1.6
4,114,863 + ABIE41_RS20020 0.35 +0.1
4,114,863 + ABIE41_RS20020 0.35 -1.3
4,114,863 + ABIE41_RS20020 0.35 -0.2
4,114,863 + ABIE41_RS20020 0.35 +0.2
4,114,863 + ABIE41_RS20020 0.35 +2.4
4,114,864 - ABIE41_RS20020 0.35 +1.2
4,114,864 - ABIE41_RS20020 0.35 -1.6
4,114,864 - ABIE41_RS20020 0.35 -0.3
4,114,864 - ABIE41_RS20020 0.35 +0.5
4,114,864 - ABIE41_RS20020 0.35 -1.4
4,114,864 - ABIE41_RS20020 0.35 -0.2
4,114,864 - ABIE41_RS20020 0.35 +0.8
4,114,864 - ABIE41_RS20020 0.35 -0.4
4,114,917 + ABIE41_RS20020 0.40 +0.3
4,115,124 + ABIE41_RS20020 0.58 -0.1
4,115,124 + ABIE41_RS20020 0.58 +0.1
4,115,124 + ABIE41_RS20020 0.58 -0.2
4,115,125 - ABIE41_RS20020 0.58 -0.3
4,115,335 - ABIE41_RS20020 0.77 +0.2
4,115,335 - ABIE41_RS20020 0.77 -0.0
4,115,341 - ABIE41_RS20020 0.77 -0.9
4,115,341 - ABIE41_RS20020 0.77 +0.3
4,115,370 + ABIE41_RS20020 0.80 +2.8
4,115,382 + ABIE41_RS20020 0.81 -0.1
4,115,382 + ABIE41_RS20020 0.81 +0.1
4,115,382 + ABIE41_RS20020 0.81 -0.8
4,115,382 + ABIE41_RS20020 0.81 +0.3
4,115,383 - ABIE41_RS20020 0.81 +0.8
4,115,383 - ABIE41_RS20020 0.81 -0.2
4,115,383 - ABIE41_RS20020 0.81 +0.5
4,115,383 - ABIE41_RS20020 0.81 -0.8
4,115,383 - ABIE41_RS20020 0.81 +1.5
4,115,383 - ABIE41_RS20020 0.81 +0.0
4,115,383 - ABIE41_RS20020 0.81 +0.7
4,115,383 - ABIE41_RS20020 0.81 +0.1

Or see this region's nucleotide sequence