Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08980 and ABIE41_RS08985 are separated by 28 nucleotides ABIE41_RS08985 and ABIE41_RS08990 are separated by 109 nucleotides ABIE41_RS08990 and ABIE41_RS08995 are separated by 134 nucleotides
ABIE41_RS08980: ABIE41_RS08980 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,860,218 to 1,861,507
_RS08980
ABIE41_RS08985: ABIE41_RS08985 - MAPEG family protein, at 1,861,536 to 1,861,919
_RS08985
ABIE41_RS08990: ABIE41_RS08990 - dihydrolipoyl dehydrogenase, at 1,862,029 to 1,863,429
_RS08990
ABIE41_RS08995: ABIE41_RS08995 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,863,564 to 1,864,433
_RS08995
Position (kb)
1862
1863
1864 Strain fitness (log2 ratio)
-1
0
1 at 1861.818 kb on + strand, within ABIE41_RS08985 at 1861.818 kb on + strand, within ABIE41_RS08985 at 1861.830 kb on + strand, within ABIE41_RS08985 at 1861.914 kb on + strand at 1861.915 kb on - strand at 1861.997 kb on + strand at 1863.423 kb on + strand at 1863.423 kb on + strand at 1863.423 kb on + strand at 1863.423 kb on + strand at 1863.423 kb on + strand at 1863.424 kb on - strand at 1863.424 kb on - strand at 1863.424 kb on - strand at 1863.424 kb on - strand at 1863.596 kb on + strand at 1863.596 kb on + strand at 1863.597 kb on - strand at 1863.597 kb on - strand at 1863.886 kb on - strand, within ABIE41_RS08995 at 1863.886 kb on - strand, within ABIE41_RS08995 at 1863.973 kb on - strand, within ABIE41_RS08995
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,861,818 + ABIE41_RS08985 0.73 -1.1 1,861,818 + ABIE41_RS08985 0.73 -1.2 1,861,830 + ABIE41_RS08985 0.77 -0.7 1,861,914 + +0.3 1,861,915 - -0.7 1,861,997 + -0.1 1,863,423 + -0.3 1,863,423 + +1.2 1,863,423 + -0.4 1,863,423 + -0.7 1,863,423 + +0.4 1,863,424 - -0.6 1,863,424 - +0.8 1,863,424 - +0.6 1,863,424 - +0.7 1,863,596 + -1.6 1,863,596 + -1.3 1,863,597 - -0.1 1,863,597 - +0.7 1,863,886 - ABIE41_RS08995 0.37 -1.1 1,863,886 - ABIE41_RS08995 0.37 +0.6 1,863,973 - ABIE41_RS08995 0.47 -0.9
Or see this region's nucleotide sequence