Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03350 and ABIE41_RS03355 are separated by 124 nucleotides ABIE41_RS03355 and ABIE41_RS03360 are separated by 2 nucleotides ABIE41_RS03360 and ABIE41_RS03365 are separated by 3 nucleotides
ABIE41_RS03350: ABIE41_RS03350 - ABC transporter ATP-binding protein, at 697,732 to 699,264
_RS03350
ABIE41_RS03355: ABIE41_RS03355 - ABC transporter permease, at 699,389 to 700,489
_RS03355
ABIE41_RS03360: ABIE41_RS03360 - ABC transporter permease, at 700,492 to 701,466
_RS03360
ABIE41_RS03365: ABIE41_RS03365 - cytidine deaminase, at 701,470 to 701,889
_RS03365
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.825 kb on - strand, within ABIE41_RS03350 at 698.908 kb on + strand, within ABIE41_RS03350 at 698.908 kb on + strand, within ABIE41_RS03350 at 698.908 kb on + strand, within ABIE41_RS03350 at 698.909 kb on - strand, within ABIE41_RS03350 at 698.909 kb on - strand, within ABIE41_RS03350 at 698.909 kb on - strand, within ABIE41_RS03350 at 699.275 kb on + strand at 699.575 kb on + strand, within ABIE41_RS03355 at 699.575 kb on + strand, within ABIE41_RS03355 at 699.576 kb on - strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.579 kb on - strand, within ABIE41_RS03355 at 699.579 kb on - strand, within ABIE41_RS03355 at 699.637 kb on - strand, within ABIE41_RS03355 at 699.826 kb on + strand, within ABIE41_RS03355 at 699.826 kb on + strand, within ABIE41_RS03355 at 699.827 kb on - strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.870 kb on - strand, within ABIE41_RS03355 at 699.870 kb on - strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.978 kb on + strand, within ABIE41_RS03360 at 701.158 kb on + strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.378 kb on - strand at 701.378 kb on - strand at 701.378 kb on - strand at 701.450 kb on - strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.454 kb on - strand at 701.454 kb on - strand at 701.454 kb on - strand at 701.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 698,825 - ABIE41_RS03350 0.71 +1.1 698,908 + ABIE41_RS03350 0.77 +1.0 698,908 + ABIE41_RS03350 0.77 +0.5 698,908 + ABIE41_RS03350 0.77 +1.9 698,909 - ABIE41_RS03350 0.77 +0.8 698,909 - ABIE41_RS03350 0.77 +0.3 698,909 - ABIE41_RS03350 0.77 +0.5 699,275 + -0.0 699,575 + ABIE41_RS03355 0.17 +1.3 699,575 + ABIE41_RS03355 0.17 +0.5 699,576 - ABIE41_RS03355 0.17 -2.6 699,578 + ABIE41_RS03355 0.17 +0.2 699,578 + ABIE41_RS03355 0.17 -0.2 699,578 + ABIE41_RS03355 0.17 +0.9 699,578 + ABIE41_RS03355 0.17 -0.8 699,579 - ABIE41_RS03355 0.17 +0.2 699,579 - ABIE41_RS03355 0.17 +0.3 699,637 - ABIE41_RS03355 0.23 -0.1 699,826 + ABIE41_RS03355 0.40 +0.3 699,826 + ABIE41_RS03355 0.40 -2.4 699,827 - ABIE41_RS03355 0.40 -0.3 699,869 + ABIE41_RS03355 0.44 -0.9 699,869 + ABIE41_RS03355 0.44 -0.4 699,869 + ABIE41_RS03355 0.44 +0.1 699,869 + ABIE41_RS03355 0.44 -0.5 699,869 + ABIE41_RS03355 0.44 +0.4 699,870 - ABIE41_RS03355 0.44 +0.8 699,870 - ABIE41_RS03355 0.44 -0.7 700,334 + ABIE41_RS03355 0.86 +1.1 700,334 + ABIE41_RS03355 0.86 +1.5 700,334 + ABIE41_RS03355 0.86 +0.3 700,942 + ABIE41_RS03360 0.46 -0.2 700,942 + ABIE41_RS03360 0.46 +0.1 700,942 + ABIE41_RS03360 0.46 +0.2 700,942 + ABIE41_RS03360 0.46 -0.3 700,942 + ABIE41_RS03360 0.46 -1.2 700,942 + ABIE41_RS03360 0.46 +1.2 700,943 - ABIE41_RS03360 0.46 -0.5 700,943 - ABIE41_RS03360 0.46 +0.5 700,943 - ABIE41_RS03360 0.46 -0.0 700,978 + ABIE41_RS03360 0.50 +0.0 701,158 + ABIE41_RS03360 0.68 -1.7 701,159 - ABIE41_RS03360 0.68 -2.0 701,159 - ABIE41_RS03360 0.68 +0.6 701,159 - ABIE41_RS03360 0.68 -1.9 701,196 + ABIE41_RS03360 0.72 -0.0 701,196 + ABIE41_RS03360 0.72 -0.5 701,196 + ABIE41_RS03360 0.72 +2.0 701,197 - ABIE41_RS03360 0.72 +0.4 701,197 - ABIE41_RS03360 0.72 +0.2 701,197 - ABIE41_RS03360 0.72 -0.3 701,197 - ABIE41_RS03360 0.72 +0.5 701,197 - ABIE41_RS03360 0.72 +0.3 701,378 - -0.0 701,378 - -0.1 701,378 - -0.6 701,450 - -1.3 701,453 + +0.7 701,453 + -0.2 701,453 + +0.0 701,453 + +0.5 701,453 + -0.5 701,453 + +1.7 701,454 - +0.3 701,454 - +0.2 701,454 - -1.3 701,454 - -0.0
Or see this region's nucleotide sequence