Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00165

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00155 and ABIE41_RS00160 are separated by 57 nucleotidesABIE41_RS00160 and ABIE41_RS00165 are separated by 22 nucleotidesABIE41_RS00165 and ABIE41_RS00170 overlap by 1 nucleotides ABIE41_RS00155: ABIE41_RS00155 - succinyl-diaminopimelate desuccinylase, at 24,432 to 25,635 _RS00155 ABIE41_RS00160: ABIE41_RS00160 - hypothetical protein, at 25,693 to 26,277 _RS00160 ABIE41_RS00165: ABIE41_RS00165 - tRNA pseudouridine(38-40) synthase TruA, at 26,300 to 27,037 _RS00165 ABIE41_RS00170: ABIE41_RS00170 - methionyl-tRNA formyltransferase, at 27,037 to 27,966 _RS00170 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.336 kb on - strand, within ABIE41_RS00155at 25.492 kb on - strand, within ABIE41_RS00155at 25.492 kb on - strand, within ABIE41_RS00155at 25.492 kb on - strand, within ABIE41_RS00155at 25.492 kb on - strand, within ABIE41_RS00155at 25.492 kb on - strand, within ABIE41_RS00155at 25.493 kb on - strand, within ABIE41_RS00155at 25.511 kb on - strand, within ABIE41_RS00155at 25.609 kb on + strandat 25.609 kb on + strandat 25.610 kb on - strandat 25.657 kb on + strandat 25.657 kb on + strandat 25.658 kb on - strandat 25.678 kb on + strandat 25.678 kb on + strandat 25.678 kb on + strandat 25.810 kb on + strand, within ABIE41_RS00160at 25.810 kb on + strand, within ABIE41_RS00160at 25.811 kb on - strand, within ABIE41_RS00160at 25.811 kb on - strand, within ABIE41_RS00160at 26.323 kb on - strandat 26.323 kb on - strandat 26.481 kb on + strand, within ABIE41_RS00165at 26.481 kb on + strand, within ABIE41_RS00165at 26.482 kb on - strand, within ABIE41_RS00165at 26.642 kb on + strand, within ABIE41_RS00165at 26.701 kb on - strand, within ABIE41_RS00165at 26.701 kb on - strand, within ABIE41_RS00165at 26.706 kb on + strand, within ABIE41_RS00165at 26.707 kb on - strand, within ABIE41_RS00165at 26.710 kb on - strand, within ABIE41_RS00165at 27.976 kb on - strandat 27.979 kb on - strandat 27.979 kb on - strandat 27.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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25,336 - ABIE41_RS00155 0.75 -0.2
25,492 - ABIE41_RS00155 0.88 +0.4
25,492 - ABIE41_RS00155 0.88 -0.7
25,492 - ABIE41_RS00155 0.88 -0.3
25,492 - ABIE41_RS00155 0.88 -0.5
25,492 - ABIE41_RS00155 0.88 +0.7
25,493 - ABIE41_RS00155 0.88 -0.7
25,511 - ABIE41_RS00155 0.90 -1.5
25,609 + -0.6
25,609 + +0.6
25,610 - -0.1
25,657 + +0.4
25,657 + +0.2
25,658 - +1.3
25,678 + +0.6
25,678 + -0.3
25,678 + -0.6
25,810 + ABIE41_RS00160 0.20 -0.7
25,810 + ABIE41_RS00160 0.20 +0.9
25,811 - ABIE41_RS00160 0.20 +0.1
25,811 - ABIE41_RS00160 0.20 -0.7
26,323 - -1.3
26,323 - -2.1
26,481 + ABIE41_RS00165 0.25 -1.7
26,481 + ABIE41_RS00165 0.25 -2.0
26,482 - ABIE41_RS00165 0.25 -0.7
26,642 + ABIE41_RS00165 0.46 -2.3
26,701 - ABIE41_RS00165 0.54 +0.3
26,701 - ABIE41_RS00165 0.54 -1.1
26,706 + ABIE41_RS00165 0.55 -1.1
26,707 - ABIE41_RS00165 0.55 -1.1
26,710 - ABIE41_RS00165 0.56 -2.5
27,976 - +0.1
27,979 - -0.1
27,979 - -0.7
27,979 - -0.4

Or see this region's nucleotide sequence