Strain Fitness in Pseudomonas simiae WCS417 around PS417_13845

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13840 and PS417_13845 are separated by 61 nucleotidesPS417_13845 and PS417_13850 are separated by 11 nucleotides PS417_13840: PS417_13840 - isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 3,040,452 to 3,041,603 _13840 PS417_13845: PS417_13845 - enoyl-CoA hydratase, at 3,041,665 to 3,042,438 _13845 PS417_13850: PS417_13850 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 3,042,450 to 3,043,577 _13850 Position (kb) 3041 3042 3043Strain fitness (log2 ratio) -1 0 1at 3040.725 kb on - strand, within PS417_13840at 3041.481 kb on + strand, within PS417_13840at 3041.482 kb on - strand, within PS417_13840at 3041.482 kb on - strand, within PS417_13840at 3041.614 kb on + strandat 3043.006 kb on + strandat 3043.137 kb on + strand, within PS417_13850at 3043.138 kb on - strand, within PS417_13850at 3043.141 kb on + strand, within PS417_13850at 3043.141 kb on + strand, within PS417_13850at 3043.142 kb on - strand, within PS417_13850at 3043.142 kb on - strand, within PS417_13850at 3043.178 kb on + strand, within PS417_13850at 3043.378 kb on + strand, within PS417_13850

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,040,725 - PS417_13840 0.24 -1.3
3,041,481 + PS417_13840 0.89 +0.2
3,041,482 - PS417_13840 0.89 -0.2
3,041,482 - PS417_13840 0.89 +0.3
3,041,614 + -0.5
3,043,006 + -1.1
3,043,137 + PS417_13850 0.61 +0.1
3,043,138 - PS417_13850 0.61 +0.4
3,043,141 + PS417_13850 0.61 -0.2
3,043,141 + PS417_13850 0.61 -0.4
3,043,142 - PS417_13850 0.61 +0.2
3,043,142 - PS417_13850 0.61 +0.8
3,043,178 + PS417_13850 0.65 -0.0
3,043,378 + PS417_13850 0.82 +0.6

Or see this region's nucleotide sequence