Experiment: 2-Deoxy-D-ribonic lithium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10515 and PS417_10520 are separated by 11 nucleotides PS417_10520 and PS417_10525 are separated by 34 nucleotides PS417_10525 and PS417_10530 are separated by 133 nucleotides
PS417_10515: PS417_10515 - acetyl-CoA acetyltransferase, at 2,243,843 to 2,245,024
_10515
PS417_10520: PS417_10520 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,036 to 2,245,695
_10520
PS417_10525: PS417_10525 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,730 to 2,246,428
_10525
PS417_10530: PS417_10530 - LysR family transcriptional regulator, at 2,246,562 to 2,247,467
_10530
Position (kb)
2245
2246
2247 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2244.858 kb on - strand, within PS417_10515 at 2245.184 kb on - strand, within PS417_10520 at 2245.370 kb on - strand, within PS417_10520 at 2245.370 kb on - strand, within PS417_10520 at 2245.370 kb on - strand, within PS417_10520 at 2245.394 kb on - strand, within PS417_10520 at 2245.708 kb on + strand at 2245.731 kb on + strand at 2245.732 kb on - strand at 2245.794 kb on + strand at 2246.489 kb on - strand at 2246.571 kb on - strand at 2246.897 kb on - strand, within PS417_10530 at 2246.897 kb on - strand, within PS417_10530 at 2246.897 kb on - strand, within PS417_10530 at 2247.042 kb on + strand, within PS417_10530 at 2247.367 kb on + strand, within PS417_10530 at 2247.367 kb on + strand, within PS417_10530 at 2247.367 kb on + strand, within PS417_10530 at 2247.368 kb on - strand, within PS417_10530 at 2247.368 kb on - strand, within PS417_10530 at 2247.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C) remove 2,244,858 - PS417_10515 0.86 -2.4 2,245,184 - PS417_10520 0.22 -2.6 2,245,370 - PS417_10520 0.51 -2.7 2,245,370 - PS417_10520 0.51 -1.4 2,245,370 - PS417_10520 0.51 -1.8 2,245,394 - PS417_10520 0.54 -1.9 2,245,708 + -1.6 2,245,731 + -0.6 2,245,732 - -3.0 2,245,794 + +0.7 2,246,489 - -0.8 2,246,571 - -0.1 2,246,897 - PS417_10530 0.37 -0.3 2,246,897 - PS417_10530 0.37 -0.1 2,246,897 - PS417_10530 0.37 +0.7 2,247,042 + PS417_10530 0.53 -0.7 2,247,367 + PS417_10530 0.89 -1.5 2,247,367 + PS417_10530 0.89 -0.8 2,247,367 + PS417_10530 0.89 -2.2 2,247,368 - PS417_10530 0.89 -3.5 2,247,368 - PS417_10530 0.89 -2.9 2,247,419 + -1.9
Or see this region's nucleotide sequence