Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26835 and PS417_26840 are separated by 33 nucleotides PS417_26840 and PS417_26845 are separated by 146 nucleotides PS417_26845 and PS417_26850 are separated by 28 nucleotides PS417_26850 and PS417_26855 are separated by 85 nucleotides
PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495
_26835
PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200
_26840
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
PS417_26850: PS417_26850 - twin-arginine translocation pathway signal protein, at 5,797,803 to 5,798,348
_26850
PS417_26855: PS417_26855 - GMC family oxidoreductase, at 5,798,434 to 5,800,029
_26855
Position (kb) 5796
5797
5798 Strain fitness (log2 ratio) -2
-1
0
1 at 5795.506 kb on + strand at 5795.530 kb on + strand at 5795.531 kb on - strand at 5795.580 kb on + strand at 5795.581 kb on - strand at 5795.645 kb on - strand, within PS417_26840 at 5795.806 kb on + strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.187 kb on - strand at 5796.218 kb on - strand at 5796.218 kb on - strand at 5796.258 kb on - strand at 5796.275 kb on + strand at 5796.275 kb on + strand at 5796.294 kb on - strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.326 kb on - strand at 5796.328 kb on - strand at 5796.366 kb on - strand at 5796.366 kb on - strand at 5796.606 kb on - strand, within PS417_26845 at 5796.606 kb on - strand, within PS417_26845 at 5796.692 kb on + strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5797.094 kb on - strand, within PS417_26845 at 5797.133 kb on + strand, within PS417_26845 at 5797.134 kb on - strand, within PS417_26845 at 5797.275 kb on - strand, within PS417_26845 at 5797.319 kb on + strand, within PS417_26845 at 5797.356 kb on + strand, within PS417_26845 at 5797.457 kb on + strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.490 kb on + strand, within PS417_26845 at 5797.491 kb on - strand, within PS417_26845 at 5797.493 kb on + strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.959 kb on - strand, within PS417_26850 at 5798.346 kb on + strand at 5798.412 kb on - strand at 5798.665 kb on + strand, within PS417_26855 at 5798.665 kb on + strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 5,795,506 + +0.4 5,795,530 + +1.1 5,795,531 - -1.1 5,795,580 + -0.1 5,795,581 - -0.9 5,795,645 - PS417_26840 0.17 -0.1 5,795,806 + PS417_26840 0.41 -0.1 5,795,807 - PS417_26840 0.41 +0.5 5,795,807 - PS417_26840 0.41 -0.0 5,796,019 + PS417_26840 0.73 -0.0 5,796,019 + PS417_26840 0.73 -0.2 5,796,067 + PS417_26840 0.80 -0.9 5,796,067 + PS417_26840 0.80 -0.5 5,796,067 + PS417_26840 0.80 -1.0 5,796,187 - -0.7 5,796,218 - -1.0 5,796,218 - +0.6 5,796,258 - -0.3 5,796,275 + +0.6 5,796,275 + -0.3 5,796,294 - -0.1 5,796,325 + +0.8 5,796,325 + -0.3 5,796,325 + +0.1 5,796,325 + -0.0 5,796,325 + +0.7 5,796,326 - -0.7 5,796,328 - -0.4 5,796,366 - +1.5 5,796,366 - -0.5 5,796,606 - PS417_26845 0.18 -0.7 5,796,606 - PS417_26845 0.18 -0.1 5,796,692 + PS417_26845 0.24 -0.6 5,796,693 - PS417_26845 0.24 +0.5 5,796,693 - PS417_26845 0.24 +0.3 5,796,693 - PS417_26845 0.24 +0.3 5,797,094 - PS417_26845 0.52 -1.3 5,797,133 + PS417_26845 0.55 +0.1 5,797,134 - PS417_26845 0.55 +0.1 5,797,275 - PS417_26845 0.65 +0.1 5,797,319 + PS417_26845 0.68 +0.2 5,797,356 + PS417_26845 0.71 +1.0 5,797,457 + PS417_26845 0.78 +0.2 5,797,458 - PS417_26845 0.78 -0.4 5,797,458 - PS417_26845 0.78 +0.6 5,797,458 - PS417_26845 0.78 +0.3 5,797,490 + PS417_26845 0.80 -0.9 5,797,491 - PS417_26845 0.80 +0.0 5,797,493 + PS417_26845 0.80 +0.6 5,797,494 - PS417_26845 0.80 +0.2 5,797,494 - PS417_26845 0.80 -0.3 5,797,494 - PS417_26845 0.80 +0.2 5,797,494 - PS417_26845 0.80 -0.6 5,797,959 - PS417_26850 0.29 -1.8 5,798,346 + +1.5 5,798,412 - -0.3 5,798,665 + PS417_26855 0.14 +0.1 5,798,665 + PS417_26855 0.14 -0.1 5,798,666 - PS417_26855 0.15 +0.1 5,798,666 - PS417_26855 0.15 +0.1 5,798,666 - PS417_26855 0.15 +0.5
Or see this region's nucleotide sequence