Strain Fitness in Pseudomonas simiae WCS417 around PS417_06100

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06090 and PS417_06095 are separated by 3 nucleotidesPS417_06095 and PS417_06100 are separated by 96 nucleotidesPS417_06100 and PS417_06105 are separated by 190 nucleotidesPS417_06105 and PS417_06110 are separated by 93 nucleotides PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840 _06090 PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464 _06095 PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343 _06100 PS417_06105: PS417_06105 - TetR family transcriptional regulator, at 1,352,534 to 1,353,169 _06105 PS417_06110: PS417_06110 - RND transporter, at 1,353,263 to 1,354,363 _06110 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.582 kb on + strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strandat 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.778 kb on + strandat 1351.398 kb on + strand, within PS417_06095at 1351.399 kb on - strand, within PS417_06095at 1351.432 kb on + strandat 1351.433 kb on - strandat 1351.496 kb on + strandat 1351.537 kb on + strandat 1351.541 kb on - strandat 1352.090 kb on - strand, within PS417_06100at 1352.317 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.385 kb on + strandat 1352.386 kb on - strandat 1352.554 kb on + strandat 1352.555 kb on - strandat 1352.622 kb on + strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.879 kb on - strand, within PS417_06105at 1352.925 kb on + strand, within PS417_06105at 1352.925 kb on + strand, within PS417_06105at 1352.926 kb on - strand, within PS417_06105at 1352.926 kb on - strand, within PS417_06105at 1353.055 kb on + strand, within PS417_06105at 1353.179 kb on + strandat 1353.205 kb on + strandat 1353.214 kb on - strandat 1353.223 kb on + strandat 1353.235 kb on + strandat 1353.271 kb on + strandat 1353.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,350,582 + PS417_06090 0.62 +0.4
1,350,583 - PS417_06090 0.62 -0.3
1,350,583 - PS417_06090 0.62 +0.1
1,350,583 - +1.3
1,350,586 + PS417_06090 0.62 +0.7
1,350,586 + PS417_06090 0.62 +0.3
1,350,586 + PS417_06090 0.62 +2.5
1,350,586 + PS417_06090 0.62 +0.1
1,350,586 + PS417_06090 0.62 -0.7
1,350,587 - PS417_06090 0.62 +0.0
1,350,587 - PS417_06090 0.62 +0.5
1,350,587 - PS417_06090 0.62 -1.3
1,350,587 - PS417_06090 0.62 +0.3
1,350,587 - PS417_06090 0.62 -1.4
1,350,587 - PS417_06090 0.62 +0.6
1,350,587 - PS417_06090 0.62 +0.8
1,350,587 - PS417_06090 0.62 -0.1
1,350,587 - PS417_06090 0.62 -0.8
1,350,778 + -0.3
1,351,398 + PS417_06095 0.89 -0.2
1,351,399 - PS417_06095 0.89 -1.9
1,351,432 + -0.3
1,351,433 - +0.1
1,351,496 + -1.0
1,351,537 + +1.0
1,351,541 - +0.3
1,352,090 - PS417_06100 0.68 -1.4
1,352,317 + -0.1
1,352,377 + +0.2
1,352,377 + +0.2
1,352,377 + -0.1
1,352,377 + +1.7
1,352,377 + -0.3
1,352,378 - +1.5
1,352,378 - -0.1
1,352,378 - +0.1
1,352,378 - -0.7
1,352,378 - -0.9
1,352,378 - +0.2
1,352,378 - -0.6
1,352,385 + +0.3
1,352,386 - -0.3
1,352,554 + +0.5
1,352,555 - -0.1
1,352,622 + PS417_06105 0.14 +0.3
1,352,623 - PS417_06105 0.14 -0.4
1,352,623 - PS417_06105 0.14 +1.0
1,352,623 - PS417_06105 0.14 -0.5
1,352,879 - PS417_06105 0.54 -0.6
1,352,925 + PS417_06105 0.61 -0.6
1,352,925 + PS417_06105 0.61 +0.4
1,352,926 - PS417_06105 0.62 +0.9
1,352,926 - PS417_06105 0.62 -0.1
1,353,055 + PS417_06105 0.82 +1.4
1,353,179 + +0.3
1,353,205 + +0.1
1,353,214 - -0.2
1,353,223 + +0.1
1,353,235 + -1.7
1,353,271 + +0.1
1,353,272 - +0.3

Or see this region's nucleotide sequence