Strain Fitness in Pseudomonas simiae WCS417 around PS417_21300

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21295 and PS417_21300 are separated by 2 nucleotidesPS417_21300 and PS417_21305 are separated by 507 nucleotides PS417_21295: PS417_21295 - electron transfer flavoprotein subunit beta, at 4,627,791 to 4,628,720 _21295 PS417_21300: PS417_21300 - electron transporter RnfB, at 4,628,723 to 4,629,472 _21300 PS417_21305: PS417_21305 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,629,980 to 4,631,644 _21305 Position (kb) 4628 4629 4630Strain fitness (log2 ratio) -1 0 1at 4627.773 kb on - strandat 4627.773 kb on - strandat 4627.775 kb on - strandat 4627.775 kb on - strandat 4629.790 kb on + strandat 4629.845 kb on - strandat 4629.865 kb on + strandat 4629.869 kb on + strandat 4629.870 kb on - strandat 4629.870 kb on - strandat 4629.871 kb on + strandat 4629.871 kb on + strandat 4629.872 kb on - strandat 4629.872 kb on - strandat 4629.883 kb on + strandat 4629.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,627,773 - +0.1
4,627,773 - -0.5
4,627,775 - -0.1
4,627,775 - -1.7
4,629,790 + -0.8
4,629,845 - -0.9
4,629,865 + -0.5
4,629,869 + -0.5
4,629,870 - -1.3
4,629,870 - +0.0
4,629,871 + +1.5
4,629,871 + -0.5
4,629,872 - -0.7
4,629,872 - +0.3
4,629,883 + -1.7
4,629,883 + +1.1

Or see this region's nucleotide sequence