Strain Fitness in Pseudomonas simiae WCS417 around PS417_21295

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21285 and PS417_21290 are separated by 9 nucleotidesPS417_21290 and PS417_21295 are separated by 70 nucleotidesPS417_21295 and PS417_21300 are separated by 2 nucleotides PS417_21285: PS417_21285 - hypothetical protein, at 4,626,533 to 4,626,895 _21285 PS417_21290: PS417_21290 - ABC transporter substrate-binding protein, at 4,626,905 to 4,627,720 _21290 PS417_21295: PS417_21295 - electron transfer flavoprotein subunit beta, at 4,627,791 to 4,628,720 _21295 PS417_21300: PS417_21300 - electron transporter RnfB, at 4,628,723 to 4,629,472 _21300 Position (kb) 4627 4628 4629Strain fitness (log2 ratio) -1 0 1at 4627.075 kb on - strand, within PS417_21290at 4627.097 kb on + strand, within PS417_21290at 4627.098 kb on - strand, within PS417_21290at 4627.098 kb on - strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.335 kb on + strand, within PS417_21290at 4627.371 kb on + strand, within PS417_21290at 4627.401 kb on + strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.551 kb on - strand, within PS417_21290at 4627.551 kb on - strand, within PS417_21290at 4627.680 kb on - strandat 4627.773 kb on - strandat 4627.773 kb on - strandat 4627.775 kb on - strandat 4627.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,627,075 - PS417_21290 0.21 -0.9
4,627,097 + PS417_21290 0.24 -0.1
4,627,098 - PS417_21290 0.24 -0.6
4,627,098 - PS417_21290 0.24 +0.1
4,627,176 + PS417_21290 0.33 +0.6
4,627,176 + PS417_21290 0.33 -1.2
4,627,176 + PS417_21290 0.33 -1.6
4,627,335 + PS417_21290 0.53 +0.6
4,627,371 + PS417_21290 0.57 -0.2
4,627,401 + PS417_21290 0.61 +1.0
4,627,402 - PS417_21290 0.61 -0.0
4,627,402 - PS417_21290 0.61 +0.5
4,627,402 - PS417_21290 0.61 +0.1
4,627,551 - PS417_21290 0.79 +0.5
4,627,551 - PS417_21290 0.79 +0.0
4,627,680 - -0.8
4,627,773 - +0.1
4,627,773 - -0.5
4,627,775 - -0.1
4,627,775 - -1.7

Or see this region's nucleotide sequence