Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21205 and PS417_21210 overlap by 4 nucleotides PS417_21210 and PS417_21215 are separated by 83 nucleotides PS417_21215 and PS417_21220 are separated by 16 nucleotides
PS417_21205: PS417_21205 - magnesium transporter, at 4,611,155 to 4,612,126
_21205
PS417_21210: PS417_21210 - amidotransferase, at 4,612,123 to 4,612,848
_21210
PS417_21215: PS417_21215 - 3-hydroxyacyl-CoA dehydrogenase, at 4,612,932 to 4,615,079
_21215
PS417_21220: PS417_21220 - acetyl-CoA acetyltransferase, at 4,615,096 to 4,616,301
_21220
Position (kb) 4612
4613
4614
4615
4616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4612.001 kb on + strand, within PS417_21205 at 4612.002 kb on - strand, within PS417_21205 at 4612.002 kb on - strand, within PS417_21205 at 4612.002 kb on - strand, within PS417_21205 at 4612.044 kb on - strand at 4612.049 kb on + strand at 4612.049 kb on + strand at 4612.124 kb on + strand at 4612.125 kb on - strand at 4612.224 kb on - strand, within PS417_21210 at 4612.601 kb on + strand, within PS417_21210 at 4612.602 kb on - strand, within PS417_21210 at 4612.719 kb on - strand, within PS417_21210 at 4613.028 kb on + strand at 4613.029 kb on - strand at 4613.057 kb on + strand at 4613.216 kb on + strand, within PS417_21215 at 4613.216 kb on + strand, within PS417_21215 at 4613.217 kb on - strand, within PS417_21215 at 4613.217 kb on - strand, within PS417_21215 at 4613.263 kb on + strand, within PS417_21215 at 4613.263 kb on + strand, within PS417_21215 at 4613.263 kb on + strand at 4613.263 kb on + strand, within PS417_21215 at 4613.284 kb on + strand at 4613.285 kb on - strand, within PS417_21215 at 4613.290 kb on + strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4613.291 kb on - strand, within PS417_21215 at 4614.139 kb on + strand, within PS417_21215 at 4614.140 kb on - strand, within PS417_21215 at 4614.351 kb on - strand, within PS417_21215 at 4614.526 kb on - strand at 4614.706 kb on + strand, within PS417_21215 at 4614.915 kb on + strand at 4615.067 kb on + strand at 4615.067 kb on + strand at 4615.067 kb on + strand at 4615.583 kb on + strand, within PS417_21220 at 4615.583 kb on + strand, within PS417_21220 at 4615.707 kb on + strand, within PS417_21220 at 4615.707 kb on + strand, within PS417_21220 at 4615.707 kb on + strand, within PS417_21220 at 4615.881 kb on + strand, within PS417_21220 at 4615.881 kb on + strand at 4615.882 kb on - strand, within PS417_21220
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 4,612,001 + PS417_21205 0.87 -0.5 4,612,002 - PS417_21205 0.87 +0.0 4,612,002 - PS417_21205 0.87 +0.1 4,612,002 - PS417_21205 0.87 +1.3 4,612,044 - -0.3 4,612,049 + -0.2 4,612,049 + +0.7 4,612,124 + -0.2 4,612,125 - +1.1 4,612,224 - PS417_21210 0.14 +0.4 4,612,601 + PS417_21210 0.66 -0.2 4,612,602 - PS417_21210 0.66 -1.3 4,612,719 - PS417_21210 0.82 -1.7 4,613,028 + +0.4 4,613,029 - +0.8 4,613,057 + -0.4 4,613,216 + PS417_21215 0.13 -0.3 4,613,216 + PS417_21215 0.13 -1.1 4,613,217 - PS417_21215 0.13 +0.1 4,613,217 - PS417_21215 0.13 +1.1 4,613,263 + PS417_21215 0.15 +1.1 4,613,263 + PS417_21215 0.15 -0.5 4,613,263 + +0.4 4,613,263 + PS417_21215 0.15 +0.0 4,613,284 + -0.9 4,613,285 - PS417_21215 0.16 -0.2 4,613,290 + PS417_21215 0.17 -3.1 4,613,291 - PS417_21215 0.17 -0.2 4,613,291 - PS417_21215 0.17 +0.4 4,613,291 - PS417_21215 0.17 +0.1 4,613,291 - PS417_21215 0.17 -0.4 4,613,291 - PS417_21215 0.17 +0.2 4,613,291 - PS417_21215 0.17 -1.1 4,613,291 - PS417_21215 0.17 -0.3 4,614,139 + PS417_21215 0.56 -0.6 4,614,140 - PS417_21215 0.56 -1.3 4,614,351 - PS417_21215 0.66 -0.0 4,614,526 - +0.5 4,614,706 + PS417_21215 0.83 +0.1 4,614,915 + -2.1 4,615,067 + +1.1 4,615,067 + +0.1 4,615,067 + -1.2 4,615,583 + PS417_21220 0.40 -0.2 4,615,583 + PS417_21220 0.40 +0.4 4,615,707 + PS417_21220 0.51 -0.5 4,615,707 + PS417_21220 0.51 +0.4 4,615,707 + PS417_21220 0.51 +1.0 4,615,881 + PS417_21220 0.65 +0.4 4,615,881 + +0.5 4,615,882 - PS417_21220 0.65 +0.5
Or see this region's nucleotide sequence