Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2546

Experiment: Xylobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2544 and Echvi_2545 are separated by 235 nucleotidesEchvi_2545 and Echvi_2546 overlap by 4 nucleotidesEchvi_2546 and Echvi_2547 are separated by 168 nucleotides Echvi_2544: Echvi_2544 - hypothetical protein, at 3,019,992 to 3,021,170 _2544 Echvi_2545: Echvi_2545 - Predicted transcriptional regulators, at 3,021,406 to 3,021,951 _2545 Echvi_2546: Echvi_2546 - hypothetical protein, at 3,021,948 to 3,022,052 _2546 Echvi_2547: Echvi_2547 - Site-specific recombinase XerD, at 3,022,221 to 3,023,489 _2547 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -2 -1 0 1 2at 3020.990 kb on + strand, within Echvi_2544at 3020.994 kb on + strand, within Echvi_2544at 3020.995 kb on - strand, within Echvi_2544at 3021.019 kb on + strand, within Echvi_2544at 3021.076 kb on + strandat 3021.087 kb on - strandat 3021.142 kb on - strandat 3021.148 kb on - strandat 3021.168 kb on + strandat 3021.169 kb on - strandat 3021.169 kb on - strandat 3021.169 kb on - strandat 3021.173 kb on + strandat 3021.272 kb on + strandat 3021.350 kb on + strandat 3021.459 kb on + strandat 3021.618 kb on + strand, within Echvi_2545at 3021.618 kb on + strand, within Echvi_2545at 3021.628 kb on + strand, within Echvi_2545at 3021.628 kb on + strand, within Echvi_2545at 3021.628 kb on + strand, within Echvi_2545at 3021.629 kb on - strand, within Echvi_2545at 3021.630 kb on + strand, within Echvi_2545at 3021.654 kb on - strand, within Echvi_2545at 3021.675 kb on - strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.686 kb on + strand, within Echvi_2545at 3021.687 kb on - strand, within Echvi_2545at 3021.687 kb on - strand, within Echvi_2545at 3021.689 kb on - strand, within Echvi_2545at 3021.723 kb on - strand, within Echvi_2545at 3021.852 kb on - strand, within Echvi_2545at 3021.868 kb on + strand, within Echvi_2545at 3021.869 kb on - strand, within Echvi_2545at 3021.871 kb on - strand, within Echvi_2545at 3021.871 kb on - strand, within Echvi_2545at 3021.871 kb on - strand, within Echvi_2545at 3021.991 kb on - strand, within Echvi_2546at 3022.002 kb on + strand, within Echvi_2546at 3022.003 kb on - strand, within Echvi_2546at 3022.007 kb on + strand, within Echvi_2546at 3022.024 kb on + strand, within Echvi_2546at 3022.054 kb on - strandat 3022.076 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
remove
3,020,990 + Echvi_2544 0.85 +0.2
3,020,994 + Echvi_2544 0.85 +0.5
3,020,995 - Echvi_2544 0.85 -0.1
3,021,019 + Echvi_2544 0.87 -0.5
3,021,076 + +0.7
3,021,087 - +0.0
3,021,142 - -0.6
3,021,148 - +0.0
3,021,168 + -0.4
3,021,169 - -0.8
3,021,169 - +0.1
3,021,169 - +1.2
3,021,173 + -0.2
3,021,272 + +0.3
3,021,350 + -0.9
3,021,459 + +1.3
3,021,618 + Echvi_2545 0.39 +0.8
3,021,618 + Echvi_2545 0.39 +0.2
3,021,628 + Echvi_2545 0.41 -0.0
3,021,628 + Echvi_2545 0.41 +0.7
3,021,628 + Echvi_2545 0.41 +0.4
3,021,629 - Echvi_2545 0.41 +1.8
3,021,630 + Echvi_2545 0.41 +1.3
3,021,654 - Echvi_2545 0.45 +0.4
3,021,675 - Echvi_2545 0.49 +0.4
3,021,686 + Echvi_2545 0.51 -0.1
3,021,686 + Echvi_2545 0.51 -0.4
3,021,686 + Echvi_2545 0.51 -0.2
3,021,686 + Echvi_2545 0.51 +0.9
3,021,686 + Echvi_2545 0.51 +1.0
3,021,686 + Echvi_2545 0.51 +0.3
3,021,687 - Echvi_2545 0.51 +0.1
3,021,687 - Echvi_2545 0.51 +0.6
3,021,689 - Echvi_2545 0.52 -0.4
3,021,723 - Echvi_2545 0.58 -1.2
3,021,852 - Echvi_2545 0.82 -0.1
3,021,868 + Echvi_2545 0.85 +0.2
3,021,869 - Echvi_2545 0.85 +0.6
3,021,871 - Echvi_2545 0.85 +0.2
3,021,871 - Echvi_2545 0.85 +0.8
3,021,871 - Echvi_2545 0.85 -0.2
3,021,991 - Echvi_2546 0.41 -1.8
3,022,002 + Echvi_2546 0.51 -0.3
3,022,003 - Echvi_2546 0.52 -0.2
3,022,007 + Echvi_2546 0.56 -0.5
3,022,024 + Echvi_2546 0.72 -0.9
3,022,054 - +0.1
3,022,076 - -0.0

Or see this region's nucleotide sequence