Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2544 and Echvi_2545 are separated by 235 nucleotides Echvi_2545 and Echvi_2546 overlap by 4 nucleotides Echvi_2546 and Echvi_2547 are separated by 168 nucleotides
Echvi_2544: Echvi_2544 - hypothetical protein, at 3,019,992 to 3,021,170
_2544
Echvi_2545: Echvi_2545 - Predicted transcriptional regulators, at 3,021,406 to 3,021,951
_2545
Echvi_2546: Echvi_2546 - hypothetical protein, at 3,021,948 to 3,022,052
_2546
Echvi_2547: Echvi_2547 - Site-specific recombinase XerD, at 3,022,221 to 3,023,489
_2547
Position (kb)
3021
3022
3023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3020.990 kb on + strand, within Echvi_2544 at 3020.994 kb on + strand, within Echvi_2544 at 3020.995 kb on - strand, within Echvi_2544 at 3021.019 kb on + strand, within Echvi_2544 at 3021.076 kb on + strand at 3021.087 kb on - strand at 3021.142 kb on - strand at 3021.148 kb on - strand at 3021.168 kb on + strand at 3021.169 kb on - strand at 3021.169 kb on - strand at 3021.169 kb on - strand at 3021.173 kb on + strand at 3021.272 kb on + strand at 3021.350 kb on + strand at 3021.459 kb on + strand at 3021.618 kb on + strand, within Echvi_2545 at 3021.618 kb on + strand, within Echvi_2545 at 3021.628 kb on + strand, within Echvi_2545 at 3021.628 kb on + strand, within Echvi_2545 at 3021.628 kb on + strand, within Echvi_2545 at 3021.629 kb on - strand, within Echvi_2545 at 3021.630 kb on + strand, within Echvi_2545 at 3021.654 kb on - strand, within Echvi_2545 at 3021.675 kb on - strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.686 kb on + strand, within Echvi_2545 at 3021.687 kb on - strand, within Echvi_2545 at 3021.687 kb on - strand, within Echvi_2545 at 3021.689 kb on - strand, within Echvi_2545 at 3021.723 kb on - strand, within Echvi_2545 at 3021.852 kb on - strand, within Echvi_2545 at 3021.868 kb on + strand, within Echvi_2545 at 3021.869 kb on - strand, within Echvi_2545 at 3021.871 kb on - strand, within Echvi_2545 at 3021.871 kb on - strand, within Echvi_2545 at 3021.871 kb on - strand, within Echvi_2545 at 3021.991 kb on - strand, within Echvi_2546 at 3022.002 kb on + strand, within Echvi_2546 at 3022.003 kb on - strand, within Echvi_2546 at 3022.007 kb on + strand, within Echvi_2546 at 3022.024 kb on + strand, within Echvi_2546 at 3022.054 kb on - strand at 3022.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 3,020,990 + Echvi_2544 0.85 +0.2 3,020,994 + Echvi_2544 0.85 +0.5 3,020,995 - Echvi_2544 0.85 -0.1 3,021,019 + Echvi_2544 0.87 -0.5 3,021,076 + +0.7 3,021,087 - +0.0 3,021,142 - -0.6 3,021,148 - +0.0 3,021,168 + -0.4 3,021,169 - -0.8 3,021,169 - +0.1 3,021,169 - +1.2 3,021,173 + -0.2 3,021,272 + +0.3 3,021,350 + -0.9 3,021,459 + +1.3 3,021,618 + Echvi_2545 0.39 +0.8 3,021,618 + Echvi_2545 0.39 +0.2 3,021,628 + Echvi_2545 0.41 -0.0 3,021,628 + Echvi_2545 0.41 +0.7 3,021,628 + Echvi_2545 0.41 +0.4 3,021,629 - Echvi_2545 0.41 +1.8 3,021,630 + Echvi_2545 0.41 +1.3 3,021,654 - Echvi_2545 0.45 +0.4 3,021,675 - Echvi_2545 0.49 +0.4 3,021,686 + Echvi_2545 0.51 -0.1 3,021,686 + Echvi_2545 0.51 -0.4 3,021,686 + Echvi_2545 0.51 -0.2 3,021,686 + Echvi_2545 0.51 +0.9 3,021,686 + Echvi_2545 0.51 +1.0 3,021,686 + Echvi_2545 0.51 +0.3 3,021,687 - Echvi_2545 0.51 +0.1 3,021,687 - Echvi_2545 0.51 +0.6 3,021,689 - Echvi_2545 0.52 -0.4 3,021,723 - Echvi_2545 0.58 -1.2 3,021,852 - Echvi_2545 0.82 -0.1 3,021,868 + Echvi_2545 0.85 +0.2 3,021,869 - Echvi_2545 0.85 +0.6 3,021,871 - Echvi_2545 0.85 +0.2 3,021,871 - Echvi_2545 0.85 +0.8 3,021,871 - Echvi_2545 0.85 -0.2 3,021,991 - Echvi_2546 0.41 -1.8 3,022,002 + Echvi_2546 0.51 -0.3 3,022,003 - Echvi_2546 0.52 -0.2 3,022,007 + Echvi_2546 0.56 -0.5 3,022,024 + Echvi_2546 0.72 -0.9 3,022,054 - +0.1 3,022,076 - -0.0
Or see this region's nucleotide sequence