Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0836 and Echvi_0837 are separated by 530 nucleotides Echvi_0837 and Echvi_0838 are separated by 188 nucleotides
Echvi_0836: Echvi_0836 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 951,477 to 953,936
_0836
Echvi_0837: Echvi_0837 - RNA polymerase sigma factor, sigma-70 family, at 954,467 to 955,129
_0837
Echvi_0838: Echvi_0838 - Outer membrane receptor for ferrienterochelin and colicins, at 955,318 to 958,470
_0838
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.469 kb on + strand, within Echvi_0836 at 953.474 kb on + strand, within Echvi_0836 at 953.475 kb on - strand, within Echvi_0836 at 953.476 kb on + strand, within Echvi_0836 at 953.476 kb on + strand, within Echvi_0836 at 953.477 kb on - strand, within Echvi_0836 at 953.477 kb on - strand, within Echvi_0836 at 953.512 kb on + strand, within Echvi_0836 at 953.512 kb on + strand, within Echvi_0836 at 953.577 kb on - strand, within Echvi_0836 at 953.584 kb on + strand, within Echvi_0836 at 953.585 kb on - strand, within Echvi_0836 at 953.585 kb on - strand, within Echvi_0836 at 953.707 kb on + strand at 953.707 kb on + strand at 953.707 kb on + strand at 953.708 kb on - strand at 953.708 kb on - strand at 953.711 kb on + strand at 953.712 kb on - strand at 953.712 kb on - strand at 953.732 kb on + strand at 953.732 kb on + strand at 953.748 kb on + strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.760 kb on + strand at 953.764 kb on + strand at 953.795 kb on + strand at 953.824 kb on + strand at 953.825 kb on - strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.898 kb on + strand at 953.922 kb on + strand at 953.997 kb on + strand at 953.997 kb on + strand at 954.013 kb on - strand at 954.087 kb on + strand at 954.092 kb on - strand at 954.105 kb on - strand at 954.146 kb on - strand at 954.260 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.296 kb on - strand at 954.355 kb on - strand at 954.419 kb on + strand at 954.419 kb on + strand at 954.440 kb on + strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.584 kb on + strand, within Echvi_0837 at 954.585 kb on - strand, within Echvi_0837 at 954.627 kb on + strand, within Echvi_0837 at 954.712 kb on + strand, within Echvi_0837 at 954.735 kb on - strand, within Echvi_0837 at 954.841 kb on - strand, within Echvi_0837 at 954.850 kb on + strand, within Echvi_0837 at 954.984 kb on + strand, within Echvi_0837 at 954.995 kb on - strand, within Echvi_0837 at 955.019 kb on - strand, within Echvi_0837 at 955.104 kb on - strand at 955.158 kb on - strand at 955.171 kb on + strand at 955.171 kb on + strand at 955.171 kb on + strand at 955.172 kb on - strand at 955.172 kb on - strand at 955.172 kb on - strand at 955.179 kb on + strand at 955.202 kb on - strand at 955.213 kb on + strand at 955.214 kb on - strand at 955.214 kb on - strand at 955.271 kb on + strand at 955.272 kb on - strand at 955.330 kb on - strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.415 kb on + strand at 955.415 kb on + strand at 955.415 kb on + strand at 955.416 kb on - strand at 955.416 kb on - strand at 955.421 kb on + strand at 955.421 kb on + strand at 955.421 kb on + strand at 955.422 kb on - strand at 955.422 kb on - strand at 955.426 kb on - strand at 955.480 kb on - strand at 955.480 kb on - strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.492 kb on - strand at 955.492 kb on - strand at 955.492 kb on - strand at 955.493 kb on + strand at 955.493 kb on + strand at 955.534 kb on - strand at 955.582 kb on - strand at 955.602 kb on + strand at 955.603 kb on - strand at 955.654 kb on + strand, within Echvi_0838 at 955.654 kb on + strand, within Echvi_0838 at 955.655 kb on - strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.671 kb on + strand, within Echvi_0838 at 955.682 kb on + strand, within Echvi_0838 at 955.781 kb on + strand, within Echvi_0838 at 955.781 kb on + strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.786 kb on + strand, within Echvi_0838 at 955.787 kb on - strand, within Echvi_0838 at 955.803 kb on + strand, within Echvi_0838 at 955.804 kb on - strand, within Echvi_0838 at 955.804 kb on - strand, within Echvi_0838 at 955.828 kb on - strand, within Echvi_0838 at 955.829 kb on + strand, within Echvi_0838 at 955.829 kb on + strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.836 kb on - strand, within Echvi_0838 at 955.836 kb on - strand, within Echvi_0838 at 955.863 kb on + strand, within Echvi_0838 at 955.866 kb on - strand, within Echvi_0838 at 955.866 kb on - strand, within Echvi_0838 at 955.881 kb on + strand, within Echvi_0838 at 955.912 kb on - strand, within Echvi_0838 at 955.914 kb on - strand, within Echvi_0838 at 955.945 kb on - strand, within Echvi_0838 at 955.947 kb on + strand, within Echvi_0838 at 955.947 kb on + strand, within Echvi_0838 at 955.948 kb on - strand, within Echvi_0838 at 955.950 kb on + strand, within Echvi_0838 at 955.950 kb on + strand, within Echvi_0838 at 955.974 kb on + strand, within Echvi_0838 at 955.975 kb on - strand, within Echvi_0838 at 956.060 kb on + strand, within Echvi_0838 at 956.060 kb on + strand, within Echvi_0838 at 956.061 kb on - strand, within Echvi_0838 at 956.065 kb on - strand, within Echvi_0838 at 956.066 kb on + strand, within Echvi_0838 at 956.067 kb on - strand, within Echvi_0838 at 956.126 kb on + strand, within Echvi_0838
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 953,469 + Echvi_0836 0.81 +0.0 953,474 + Echvi_0836 0.81 -0.3 953,475 - Echvi_0836 0.81 -0.4 953,476 + Echvi_0836 0.81 +0.2 953,476 + Echvi_0836 0.81 +0.2 953,477 - Echvi_0836 0.81 -1.0 953,477 - Echvi_0836 0.81 +0.6 953,512 + Echvi_0836 0.83 -1.0 953,512 + Echvi_0836 0.83 +1.0 953,577 - Echvi_0836 0.85 -0.8 953,584 + Echvi_0836 0.86 +0.9 953,585 - Echvi_0836 0.86 -0.5 953,585 - Echvi_0836 0.86 +0.5 953,707 + -0.0 953,707 + +0.6 953,707 + +0.0 953,708 - +1.2 953,708 - -1.3 953,711 + -0.4 953,712 - -0.9 953,712 - -1.0 953,732 + +0.1 953,732 + -0.7 953,748 + -0.1 953,749 - -0.8 953,749 - +1.5 953,749 - -0.2 953,760 + +0.3 953,764 + -1.2 953,795 + -0.1 953,824 + +0.9 953,825 - -0.0 953,888 + -1.3 953,888 + -0.1 953,888 + -0.3 953,888 + +0.1 953,889 - +0.5 953,889 - -0.5 953,889 - +0.5 953,889 - -1.5 953,889 - -0.1 953,898 + +1.3 953,922 + -0.5 953,997 + -1.4 953,997 + +0.0 954,013 - +0.2 954,087 + -0.5 954,092 - -1.4 954,105 - +1.8 954,146 - +0.7 954,260 - +1.0 954,295 - -0.2 954,295 - +0.5 954,295 - +0.5 954,295 - -0.1 954,296 - +2.0 954,355 - +0.3 954,419 + -0.0 954,419 + +0.2 954,440 + -0.3 954,466 - -0.3 954,466 - +0.6 954,466 - +0.5 954,466 - +1.7 954,584 + Echvi_0837 0.18 -0.5 954,585 - Echvi_0837 0.18 -2.2 954,627 + Echvi_0837 0.24 -0.1 954,712 + Echvi_0837 0.37 +0.4 954,735 - Echvi_0837 0.40 -0.1 954,841 - Echvi_0837 0.56 -0.7 954,850 + Echvi_0837 0.58 -1.8 954,984 + Echvi_0837 0.78 -0.1 954,995 - Echvi_0837 0.80 -1.3 955,019 - Echvi_0837 0.83 -0.9 955,104 - -0.3 955,158 - -0.2 955,171 + +1.8 955,171 + +1.0 955,171 + -0.7 955,172 - -0.0 955,172 - -0.5 955,172 - +1.7 955,179 + +0.0 955,202 - -0.2 955,213 + -0.7 955,214 - -0.5 955,214 - +0.2 955,271 + -1.8 955,272 - -0.5 955,330 - -0.2 955,331 + +0.4 955,331 + -1.2 955,331 + -0.2 955,331 + +0.3 955,415 + +0.1 955,415 + -0.4 955,415 + +0.5 955,416 - -0.1 955,416 - +0.1 955,421 + -1.2 955,421 + +0.5 955,421 + -0.3 955,422 - -0.9 955,422 - -0.7 955,426 - -2.1 955,480 - -0.0 955,480 - +0.1 955,491 + +0.8 955,491 + +0.5 955,491 + +0.4 955,491 + -0.9 955,492 - -0.3 955,492 - -0.1 955,492 - -0.0 955,493 + +0.5 955,493 + +0.1 955,534 - -0.5 955,582 - +0.8 955,602 + +0.0 955,603 - +0.4 955,654 + Echvi_0838 0.11 +0.2 955,654 + Echvi_0838 0.11 +0.9 955,655 - Echvi_0838 0.11 +0.3 955,658 + Echvi_0838 0.11 -0.1 955,658 + Echvi_0838 0.11 +0.7 955,658 + Echvi_0838 0.11 -0.7 955,658 + Echvi_0838 0.11 -1.8 955,658 + Echvi_0838 0.11 +2.0 955,658 + Echvi_0838 0.11 -0.7 955,658 + Echvi_0838 0.11 +1.2 955,658 + Echvi_0838 0.11 -0.6 955,659 - Echvi_0838 0.11 -0.2 955,659 - Echvi_0838 0.11 +0.0 955,659 - Echvi_0838 0.11 -0.1 955,671 + Echvi_0838 0.11 +0.2 955,682 + Echvi_0838 0.12 +0.5 955,781 + Echvi_0838 0.15 -0.2 955,781 + Echvi_0838 0.15 +0.1 955,782 - Echvi_0838 0.15 +0.0 955,782 - Echvi_0838 0.15 +0.5 955,782 - Echvi_0838 0.15 +1.6 955,786 + Echvi_0838 0.15 +0.4 955,787 - Echvi_0838 0.15 -1.1 955,803 + Echvi_0838 0.15 +0.1 955,804 - Echvi_0838 0.15 -0.4 955,804 - Echvi_0838 0.15 -1.1 955,828 - Echvi_0838 0.16 -0.1 955,829 + Echvi_0838 0.16 -0.4 955,829 + Echvi_0838 0.16 +0.0 955,830 - Echvi_0838 0.16 +0.5 955,830 - Echvi_0838 0.16 -0.5 955,830 - Echvi_0838 0.16 -0.3 955,830 - Echvi_0838 0.16 +0.4 955,836 - Echvi_0838 0.16 +1.1 955,836 - Echvi_0838 0.16 +0.9 955,863 + Echvi_0838 0.17 -1.3 955,866 - Echvi_0838 0.17 +0.0 955,866 - Echvi_0838 0.17 +0.5 955,881 + Echvi_0838 0.18 -0.1 955,912 - Echvi_0838 0.19 -0.4 955,914 - Echvi_0838 0.19 +0.7 955,945 - Echvi_0838 0.20 -0.0 955,947 + Echvi_0838 0.20 +0.7 955,947 + Echvi_0838 0.20 -1.0 955,948 - Echvi_0838 0.20 -0.5 955,950 + Echvi_0838 0.20 -1.3 955,950 + Echvi_0838 0.20 -1.0 955,974 + Echvi_0838 0.21 -0.4 955,975 - Echvi_0838 0.21 -0.0 956,060 + Echvi_0838 0.24 +0.0 956,060 + Echvi_0838 0.24 -0.9 956,061 - Echvi_0838 0.24 -0.9 956,065 - Echvi_0838 0.24 -1.0 956,066 + Echvi_0838 0.24 -1.2 956,067 - Echvi_0838 0.24 -0.9 956,126 + Echvi_0838 0.26 -0.4
Or see this region's nucleotide sequence