Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0719 and Echvi_0720 are separated by 255 nucleotides Echvi_0720 and Echvi_0721 are separated by 274 nucleotides Echvi_0721 and Echvi_0722 are separated by 5 nucleotides
Echvi_0719: Echvi_0719 - pseudouridine synthase, at 810,728 to 811,873
_0719
Echvi_0720: Echvi_0720 - hypothetical protein, at 812,129 to 812,263
_0720
Echvi_0721: Echvi_0721 - Uncharacterized protein conserved in bacteria, at 812,538 to 812,819
_0721
Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201
_0722
Position (kb) 812
813 Strain fitness (log2 ratio) -2
-1
0
1 at 811.895 kb on - strand at 811.897 kb on - strand at 811.906 kb on + strand at 811.907 kb on - strand at 811.913 kb on - strand at 811.944 kb on + strand at 811.964 kb on - strand at 812.056 kb on - strand at 812.221 kb on + strand, within Echvi_0720 at 812.222 kb on - strand, within Echvi_0720 at 812.268 kb on + strand at 812.270 kb on + strand at 812.270 kb on + strand at 812.351 kb on - strand at 812.372 kb on - strand at 812.411 kb on - strand at 812.411 kb on - strand at 812.514 kb on + strand at 812.524 kb on + strand at 812.525 kb on - strand at 812.537 kb on + strand at 812.537 kb on + strand at 812.538 kb on - strand at 812.607 kb on + strand, within Echvi_0721 at 812.642 kb on - strand, within Echvi_0721 at 812.746 kb on - strand, within Echvi_0721 at 812.781 kb on + strand, within Echvi_0721 at 812.817 kb on + strand at 812.877 kb on + strand at 813.172 kb on + strand, within Echvi_0722 at 813.173 kb on - strand, within Echvi_0722 at 813.236 kb on - strand, within Echvi_0722 at 813.240 kb on + strand, within Echvi_0722 at 813.302 kb on + strand, within Echvi_0722 at 813.302 kb on + strand, within Echvi_0722 at 813.302 kb on + strand, within Echvi_0722 at 813.302 kb on + strand, within Echvi_0722 at 813.303 kb on - strand, within Echvi_0722 at 813.307 kb on + strand, within Echvi_0722 at 813.308 kb on - strand, within Echvi_0722 at 813.308 kb on - strand, within Echvi_0722 at 813.308 kb on - strand, within Echvi_0722 at 813.372 kb on - strand, within Echvi_0722 at 813.548 kb on + strand, within Echvi_0722 at 813.562 kb on + strand, within Echvi_0722 at 813.600 kb on + strand, within Echvi_0722 at 813.601 kb on - strand, within Echvi_0722 at 813.654 kb on + strand, within Echvi_0722 at 813.740 kb on + strand, within Echvi_0722 at 813.740 kb on + strand, within Echvi_0722 at 813.741 kb on - strand, within Echvi_0722 at 813.741 kb on - strand, within Echvi_0722 at 813.741 kb on - strand, within Echvi_0722 at 813.741 kb on - strand, within Echvi_0722 at 813.741 kb on - strand, within Echvi_0722 at 813.788 kb on + strand, within Echvi_0722
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 811,895 - -0.1 811,897 - +0.0 811,906 + -0.0 811,907 - -0.3 811,913 - -0.3 811,944 + -0.7 811,964 - +0.4 812,056 - -0.4 812,221 + Echvi_0720 0.68 -0.1 812,222 - Echvi_0720 0.69 -0.2 812,268 + +0.5 812,270 + +0.9 812,270 + +1.0 812,351 - +0.2 812,372 - -0.7 812,411 - +1.5 812,411 - -1.0 812,514 + -0.1 812,524 + -0.2 812,525 - -0.9 812,537 + +0.5 812,537 + -1.4 812,538 - -0.8 812,607 + Echvi_0721 0.24 -1.5 812,642 - Echvi_0721 0.37 -0.2 812,746 - Echvi_0721 0.74 +0.0 812,781 + Echvi_0721 0.86 -1.2 812,817 + -0.3 812,877 + +1.0 813,172 + Echvi_0722 0.25 -0.8 813,173 - Echvi_0722 0.25 -1.9 813,236 - Echvi_0722 0.30 -0.3 813,240 + Echvi_0722 0.30 +1.5 813,302 + Echvi_0722 0.35 -0.3 813,302 + Echvi_0722 0.35 +0.5 813,302 + Echvi_0722 0.35 +0.8 813,302 + Echvi_0722 0.35 +0.1 813,303 - Echvi_0722 0.35 -0.4 813,307 + Echvi_0722 0.35 -0.1 813,308 - Echvi_0722 0.35 -1.7 813,308 - Echvi_0722 0.35 +0.5 813,308 - Echvi_0722 0.35 -1.4 813,372 - Echvi_0722 0.40 +1.2 813,548 + Echvi_0722 0.53 -0.2 813,562 + Echvi_0722 0.54 +1.5 813,600 + Echvi_0722 0.56 +0.2 813,601 - Echvi_0722 0.56 +0.3 813,654 + Echvi_0722 0.60 +0.2 813,740 + Echvi_0722 0.66 -0.7 813,740 + Echvi_0722 0.66 -0.1 813,741 - Echvi_0722 0.67 -1.6 813,741 - Echvi_0722 0.67 +0.2 813,741 - Echvi_0722 0.67 -0.0 813,741 - Echvi_0722 0.67 +1.5 813,741 - Echvi_0722 0.67 +0.7 813,788 + Echvi_0722 0.70 -0.4
Or see this region's nucleotide sequence