Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0328 and Echvi_0329 are separated by 69 nucleotides Echvi_0329 and Echvi_0330 are separated by 225 nucleotides
Echvi_0328: Echvi_0328 - hypothetical protein, at 345,113 to 345,778
_0328
Echvi_0329: Echvi_0329 - hypothetical protein, at 345,848 to 346,051
_0329
Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089
_0330
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.878 kb on - strand at 344.878 kb on - strand at 344.878 kb on - strand at 344.878 kb on - strand at 344.879 kb on + strand at 344.880 kb on - strand at 344.899 kb on - strand at 344.932 kb on + strand at 344.944 kb on + strand at 344.982 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.029 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.105 kb on - strand at 345.114 kb on + strand at 345.115 kb on - strand at 345.116 kb on + strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.142 kb on - strand at 345.143 kb on + strand at 345.144 kb on - strand at 345.164 kb on - strand at 345.170 kb on + strand at 345.171 kb on - strand at 345.175 kb on - strand at 345.221 kb on + strand, within Echvi_0328 at 345.222 kb on - strand, within Echvi_0328 at 345.238 kb on + strand, within Echvi_0328 at 345.291 kb on - strand, within Echvi_0328 at 345.303 kb on + strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.408 kb on + strand, within Echvi_0328 at 345.416 kb on + strand, within Echvi_0328 at 345.438 kb on - strand, within Echvi_0328 at 345.476 kb on - strand, within Echvi_0328 at 345.481 kb on + strand, within Echvi_0328 at 345.506 kb on - strand, within Echvi_0328 at 345.632 kb on + strand, within Echvi_0328 at 345.731 kb on - strand at 345.770 kb on + strand at 345.818 kb on + strand at 345.829 kb on + strand at 345.829 kb on + strand at 345.851 kb on + strand at 345.917 kb on + strand, within Echvi_0329 at 345.944 kb on + strand, within Echvi_0329 at 345.945 kb on - strand, within Echvi_0329 at 345.946 kb on + strand, within Echvi_0329 at 345.998 kb on - strand, within Echvi_0329 at 345.999 kb on + strand, within Echvi_0329 at 346.055 kb on + strand at 346.056 kb on - strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.094 kb on - strand at 346.158 kb on + strand at 346.159 kb on - strand at 346.161 kb on + strand at 346.162 kb on - strand at 346.162 kb on - strand at 346.165 kb on - strand at 346.165 kb on - strand at 346.261 kb on - strand at 346.278 kb on + strand at 346.378 kb on - strand, within Echvi_0330 at 346.562 kb on - strand, within Echvi_0330 at 346.606 kb on - strand, within Echvi_0330 at 346.938 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 344,878 - +0.2 344,878 - +0.0 344,878 - +0.7 344,878 - +0.3 344,879 + +0.3 344,880 - +0.0 344,899 - +0.5 344,932 + -0.6 344,944 + -0.6 344,982 + -1.4 345,009 + +0.8 345,009 + +1.8 345,009 + +0.4 345,009 + -0.9 345,009 + -0.5 345,010 - +0.7 345,010 - -0.3 345,029 + -1.2 345,094 + +0.4 345,094 + +0.1 345,094 + +0.6 345,094 + +0.4 345,105 - -1.2 345,114 + -0.6 345,115 - -0.3 345,116 + -1.2 345,117 - +0.7 345,117 - +0.5 345,117 - -0.1 345,117 - +1.0 345,142 - -0.1 345,143 + +0.4 345,144 - -0.4 345,164 - -0.1 345,170 + +2.3 345,171 - -0.3 345,175 - +0.2 345,221 + Echvi_0328 0.16 +0.2 345,222 - Echvi_0328 0.16 -0.1 345,238 + Echvi_0328 0.19 +0.7 345,291 - Echvi_0328 0.27 +0.2 345,303 + Echvi_0328 0.29 +0.8 345,304 - Echvi_0328 0.29 -0.4 345,304 - Echvi_0328 0.29 -0.2 345,368 + Echvi_0328 0.38 -0.6 345,368 + Echvi_0328 0.38 +1.4 345,368 + Echvi_0328 0.38 +0.4 345,368 + Echvi_0328 0.38 -0.6 345,369 - Echvi_0328 0.38 +0.2 345,369 - Echvi_0328 0.38 -0.5 345,408 + Echvi_0328 0.44 +1.1 345,416 + Echvi_0328 0.45 -0.2 345,438 - Echvi_0328 0.49 -0.9 345,476 - Echvi_0328 0.55 +0.3 345,481 + Echvi_0328 0.55 -0.6 345,506 - Echvi_0328 0.59 -0.4 345,632 + Echvi_0328 0.78 -0.3 345,731 - -0.4 345,770 + +0.4 345,818 + +0.7 345,829 + +0.5 345,829 + +0.9 345,851 + +0.2 345,917 + Echvi_0329 0.34 -0.6 345,944 + Echvi_0329 0.47 -0.6 345,945 - Echvi_0329 0.48 +1.3 345,946 + Echvi_0329 0.48 -0.3 345,998 - Echvi_0329 0.74 -0.8 345,999 + Echvi_0329 0.74 -0.3 346,055 + -1.6 346,056 - -0.9 346,058 + -0.4 346,058 + -0.2 346,058 + +0.3 346,058 + +0.6 346,094 - -0.3 346,158 + +0.3 346,159 - -0.3 346,161 + +0.8 346,162 - +0.8 346,162 - -0.3 346,165 - +0.5 346,165 - -0.2 346,261 - -0.0 346,278 + +0.0 346,378 - Echvi_0330 0.12 +0.5 346,562 - Echvi_0330 0.35 +0.6 346,606 - Echvi_0330 0.40 +0.4 346,938 + Echvi_0330 0.81 +0.2 346,968 + Echvi_0330 0.85 -0.9 346,968 + Echvi_0330 0.85 -1.5 346,968 + Echvi_0330 0.85 +0.3 346,969 - Echvi_0330 0.85 +1.0 346,969 - Echvi_0330 0.85 -1.9 346,978 + Echvi_0330 0.86 -0.1 346,978 + Echvi_0330 0.86 -0.4
Or see this region's nucleotide sequence