Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1678

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1677 and Echvi_1678 are separated by 72 nucleotidesEchvi_1678 and Echvi_1679 are separated by 94 nucleotides Echvi_1677: Echvi_1677 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 1,962,282 to 1,964,552 _1677 Echvi_1678: Echvi_1678 - Predicted dehydrogenases and related proteins, at 1,964,625 to 1,965,722 _1678 Echvi_1679: Echvi_1679 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 1,965,817 to 1,966,569 _1679 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1963.682 kb on - strand, within Echvi_1677at 1963.682 kb on - strand, within Echvi_1677at 1963.693 kb on - strand, within Echvi_1677at 1963.718 kb on - strand, within Echvi_1677at 1963.721 kb on + strand, within Echvi_1677at 1963.735 kb on + strand, within Echvi_1677at 1963.736 kb on - strand, within Echvi_1677at 1963.736 kb on - strand, within Echvi_1677at 1963.736 kb on - strand, within Echvi_1677at 1963.736 kb on - strand, within Echvi_1677at 1963.996 kb on - strand, within Echvi_1677at 1964.024 kb on + strand, within Echvi_1677at 1964.024 kb on + strand, within Echvi_1677at 1964.025 kb on - strand, within Echvi_1677at 1964.068 kb on - strand, within Echvi_1677at 1964.114 kb on - strand, within Echvi_1677at 1964.118 kb on + strand, within Echvi_1677at 1964.118 kb on + strand, within Echvi_1677at 1964.133 kb on + strand, within Echvi_1677at 1964.134 kb on - strand, within Echvi_1677at 1964.134 kb on - strand, within Echvi_1677at 1964.134 kb on - strand, within Echvi_1677at 1964.134 kb on - strand, within Echvi_1677at 1964.134 kb on - strand, within Echvi_1677at 1964.178 kb on - strand, within Echvi_1677at 1964.304 kb on + strand, within Echvi_1677at 1964.442 kb on - strandat 1964.442 kb on - strandat 1964.531 kb on - strandat 1964.531 kb on - strandat 1964.550 kb on + strandat 1964.728 kb on + strandat 1964.728 kb on + strandat 1964.787 kb on + strand, within Echvi_1678at 1964.788 kb on - strand, within Echvi_1678at 1964.789 kb on + strand, within Echvi_1678at 1964.790 kb on - strand, within Echvi_1678at 1964.790 kb on - strand, within Echvi_1678at 1964.799 kb on + strand, within Echvi_1678at 1964.836 kb on + strand, within Echvi_1678at 1964.840 kb on + strand, within Echvi_1678at 1964.840 kb on + strand, within Echvi_1678at 1964.840 kb on + strand, within Echvi_1678at 1964.840 kb on + strand, within Echvi_1678at 1964.840 kb on + strand, within Echvi_1678at 1964.841 kb on - strand, within Echvi_1678at 1964.841 kb on - strand, within Echvi_1678at 1964.841 kb on - strand, within Echvi_1678at 1964.844 kb on + strand, within Echvi_1678at 1964.844 kb on + strand, within Echvi_1678at 1964.844 kb on + strand, within Echvi_1678at 1964.844 kb on + strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.845 kb on - strand, within Echvi_1678at 1964.860 kb on + strand, within Echvi_1678at 1964.860 kb on + strand, within Echvi_1678at 1964.861 kb on - strand, within Echvi_1678at 1964.908 kb on + strand, within Echvi_1678at 1964.909 kb on - strand, within Echvi_1678at 1964.909 kb on - strand, within Echvi_1678at 1964.909 kb on - strand, within Echvi_1678at 1964.979 kb on - strand, within Echvi_1678at 1964.979 kb on - strand, within Echvi_1678at 1964.979 kb on - strand, within Echvi_1678at 1965.045 kb on - strand, within Echvi_1678at 1965.045 kb on - strand, within Echvi_1678at 1965.088 kb on - strand, within Echvi_1678at 1965.088 kb on - strand, within Echvi_1678at 1965.193 kb on - strand, within Echvi_1678at 1965.193 kb on - strand, within Echvi_1678at 1965.193 kb on - strand, within Echvi_1678at 1965.193 kb on - strand, within Echvi_1678at 1965.214 kb on + strand, within Echvi_1678at 1965.285 kb on - strand, within Echvi_1678at 1965.289 kb on - strand, within Echvi_1678at 1965.297 kb on - strand, within Echvi_1678at 1965.377 kb on + strand, within Echvi_1678at 1965.377 kb on + strand, within Echvi_1678at 1965.377 kb on + strand, within Echvi_1678at 1965.414 kb on + strand, within Echvi_1678at 1965.414 kb on + strand, within Echvi_1678at 1965.414 kb on + strand, within Echvi_1678at 1965.415 kb on - strand, within Echvi_1678at 1965.417 kb on - strand, within Echvi_1678at 1965.417 kb on - strand, within Echvi_1678at 1965.443 kb on + strand, within Echvi_1678at 1965.444 kb on - strand, within Echvi_1678at 1965.479 kb on + strand, within Echvi_1678at 1965.479 kb on + strand, within Echvi_1678at 1965.480 kb on - strand, within Echvi_1678at 1965.493 kb on - strand, within Echvi_1678at 1965.493 kb on - strand, within Echvi_1678at 1965.531 kb on + strand, within Echvi_1678at 1965.531 kb on + strand, within Echvi_1678at 1965.537 kb on - strand, within Echvi_1678at 1965.537 kb on - strand, within Echvi_1678at 1965.541 kb on - strand, within Echvi_1678at 1965.563 kb on + strand, within Echvi_1678at 1965.564 kb on - strand, within Echvi_1678at 1965.746 kb on + strandat 1965.753 kb on + strandat 1965.753 kb on + strandat 1965.754 kb on - strandat 1965.775 kb on + strandat 1965.906 kb on - strand, within Echvi_1679at 1965.937 kb on - strand, within Echvi_1679at 1965.937 kb on - strand, within Echvi_1679at 1966.028 kb on - strand, within Echvi_1679at 1966.111 kb on + strand, within Echvi_1679at 1966.211 kb on - strand, within Echvi_1679at 1966.276 kb on + strand, within Echvi_1679at 1966.276 kb on + strand, within Echvi_1679at 1966.277 kb on - strand, within Echvi_1679at 1966.340 kb on + strand, within Echvi_1679at 1966.340 kb on + strand, within Echvi_1679at 1966.341 kb on - strand, within Echvi_1679at 1966.346 kb on - strand, within Echvi_1679at 1966.346 kb on - strand, within Echvi_1679at 1966.346 kb on - strand, within Echvi_1679at 1966.346 kb on - strand, within Echvi_1679at 1966.474 kb on + strand, within Echvi_1679at 1966.513 kb on + strandat 1966.578 kb on + strandat 1966.578 kb on + strandat 1966.578 kb on + strandat 1966.578 kb on + strandat 1966.584 kb on + strandat 1966.584 kb on + strandat 1966.602 kb on - strandat 1966.602 kb on - strandat 1966.628 kb on + strandat 1966.629 kb on - strandat 1966.636 kb on + strandat 1966.636 kb on + strandat 1966.636 kb on + strandat 1966.636 kb on + strandat 1966.637 kb on - strandat 1966.712 kb on + strandat 1966.712 kb on + strandat 1966.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,963,682 - Echvi_1677 0.62 +0.7
1,963,682 - Echvi_1677 0.62 +0.6
1,963,693 - Echvi_1677 0.62 +0.2
1,963,718 - Echvi_1677 0.63 +0.1
1,963,721 + Echvi_1677 0.63 -0.0
1,963,735 + Echvi_1677 0.64 +0.0
1,963,736 - Echvi_1677 0.64 -0.3
1,963,736 - Echvi_1677 0.64 -1.4
1,963,736 - Echvi_1677 0.64 +0.1
1,963,736 - Echvi_1677 0.64 +0.0
1,963,996 - Echvi_1677 0.75 +0.9
1,964,024 + Echvi_1677 0.77 -0.2
1,964,024 + Echvi_1677 0.77 +2.8
1,964,025 - Echvi_1677 0.77 -0.2
1,964,068 - Echvi_1677 0.79 -0.0
1,964,114 - Echvi_1677 0.81 -0.1
1,964,118 + Echvi_1677 0.81 -0.5
1,964,118 + Echvi_1677 0.81 +0.2
1,964,133 + Echvi_1677 0.82 +0.3
1,964,134 - Echvi_1677 0.82 -0.3
1,964,134 - Echvi_1677 0.82 -0.2
1,964,134 - Echvi_1677 0.82 -0.1
1,964,134 - Echvi_1677 0.82 +0.2
1,964,134 - Echvi_1677 0.82 +0.1
1,964,178 - Echvi_1677 0.83 +0.7
1,964,304 + Echvi_1677 0.89 -0.1
1,964,442 - +0.6
1,964,442 - +0.1
1,964,531 - +0.4
1,964,531 - +0.2
1,964,550 + +1.2
1,964,728 + -0.9
1,964,728 + +0.2
1,964,787 + Echvi_1678 0.15 +0.9
1,964,788 - Echvi_1678 0.15 -0.7
1,964,789 + Echvi_1678 0.15 -0.7
1,964,790 - Echvi_1678 0.15 -0.2
1,964,790 - Echvi_1678 0.15 -0.6
1,964,799 + Echvi_1678 0.16 -0.6
1,964,836 + Echvi_1678 0.19 +0.2
1,964,840 + Echvi_1678 0.20 +0.0
1,964,840 + Echvi_1678 0.20 -0.8
1,964,840 + Echvi_1678 0.20 +1.0
1,964,840 + Echvi_1678 0.20 +0.6
1,964,840 + Echvi_1678 0.20 -0.6
1,964,841 - Echvi_1678 0.20 +0.2
1,964,841 - Echvi_1678 0.20 -0.3
1,964,841 - Echvi_1678 0.20 +0.0
1,964,844 + Echvi_1678 0.20 +0.3
1,964,844 + Echvi_1678 0.20 -0.7
1,964,844 + Echvi_1678 0.20 -0.4
1,964,844 + Echvi_1678 0.20 -1.4
1,964,845 - Echvi_1678 0.20 -0.1
1,964,845 - Echvi_1678 0.20 +0.4
1,964,845 - Echvi_1678 0.20 -0.0
1,964,845 - Echvi_1678 0.20 -0.6
1,964,845 - Echvi_1678 0.20 +0.6
1,964,845 - Echvi_1678 0.20 +0.5
1,964,860 + Echvi_1678 0.21 +0.3
1,964,860 + Echvi_1678 0.21 +0.1
1,964,861 - Echvi_1678 0.21 -0.5
1,964,908 + Echvi_1678 0.26 -1.5
1,964,909 - Echvi_1678 0.26 +0.2
1,964,909 - Echvi_1678 0.26 -1.8
1,964,909 - Echvi_1678 0.26 -0.2
1,964,979 - Echvi_1678 0.32 -0.7
1,964,979 - Echvi_1678 0.32 -0.7
1,964,979 - Echvi_1678 0.32 -0.1
1,965,045 - Echvi_1678 0.38 -1.5
1,965,045 - Echvi_1678 0.38 -0.3
1,965,088 - Echvi_1678 0.42 -0.4
1,965,088 - Echvi_1678 0.42 -1.6
1,965,193 - Echvi_1678 0.52 +0.8
1,965,193 - Echvi_1678 0.52 -0.4
1,965,193 - Echvi_1678 0.52 -0.6
1,965,193 - Echvi_1678 0.52 -0.2
1,965,214 + Echvi_1678 0.54 -0.7
1,965,285 - Echvi_1678 0.60 +0.4
1,965,289 - Echvi_1678 0.60 +0.2
1,965,297 - Echvi_1678 0.61 +0.3
1,965,377 + Echvi_1678 0.68 -0.5
1,965,377 + Echvi_1678 0.68 -0.9
1,965,377 + Echvi_1678 0.68 -0.8
1,965,414 + Echvi_1678 0.72 -0.5
1,965,414 + Echvi_1678 0.72 -0.2
1,965,414 + Echvi_1678 0.72 -0.1
1,965,415 - Echvi_1678 0.72 +1.4
1,965,417 - Echvi_1678 0.72 +0.5
1,965,417 - Echvi_1678 0.72 -0.0
1,965,443 + Echvi_1678 0.74 -1.3
1,965,444 - Echvi_1678 0.75 -0.6
1,965,479 + Echvi_1678 0.78 -1.4
1,965,479 + Echvi_1678 0.78 -0.3
1,965,480 - Echvi_1678 0.78 -0.7
1,965,493 - Echvi_1678 0.79 -1.0
1,965,493 - Echvi_1678 0.79 -0.1
1,965,531 + Echvi_1678 0.83 +1.1
1,965,531 + Echvi_1678 0.83 -0.2
1,965,537 - Echvi_1678 0.83 -1.3
1,965,537 - Echvi_1678 0.83 -0.5
1,965,541 - Echvi_1678 0.83 -0.8
1,965,563 + Echvi_1678 0.85 +0.3
1,965,564 - Echvi_1678 0.86 -0.3
1,965,746 + +1.2
1,965,753 + -0.3
1,965,753 + -0.2
1,965,754 - +1.9
1,965,775 + +0.9
1,965,906 - Echvi_1679 0.12 +0.0
1,965,937 - Echvi_1679 0.16 +0.2
1,965,937 - Echvi_1679 0.16 -0.2
1,966,028 - Echvi_1679 0.28 +1.2
1,966,111 + Echvi_1679 0.39 -0.5
1,966,211 - Echvi_1679 0.52 +1.0
1,966,276 + Echvi_1679 0.61 +0.4
1,966,276 + Echvi_1679 0.61 +0.5
1,966,277 - Echvi_1679 0.61 +0.1
1,966,340 + Echvi_1679 0.69 +0.1
1,966,340 + Echvi_1679 0.69 +1.8
1,966,341 - Echvi_1679 0.70 +0.0
1,966,346 - Echvi_1679 0.70 -0.9
1,966,346 - Echvi_1679 0.70 +0.4
1,966,346 - Echvi_1679 0.70 +0.6
1,966,346 - Echvi_1679 0.70 -0.4
1,966,474 + Echvi_1679 0.87 -0.1
1,966,513 + +1.4
1,966,578 + -1.1
1,966,578 + +0.2
1,966,578 + +0.1
1,966,578 + -0.4
1,966,584 + +0.3
1,966,584 + -0.1
1,966,602 - +1.8
1,966,602 - -1.4
1,966,628 + -1.7
1,966,629 - -0.0
1,966,636 + +0.3
1,966,636 + +0.2
1,966,636 + -0.1
1,966,636 + +0.0
1,966,637 - +0.4
1,966,712 + -1.6
1,966,712 + -1.8
1,966,714 - -0.5

Or see this region's nucleotide sequence