Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0763

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0762 and Echvi_0763 are separated by 128 nucleotidesEchvi_0763 and Echvi_0764 are separated by 104 nucleotides Echvi_0762: Echvi_0762 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 854,146 to 855,450 _0762 Echvi_0763: Echvi_0763 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 855,579 to 856,421 _0763 Echvi_0764: Echvi_0764 - Small-conductance mechanosensitive channel, at 856,526 to 857,575 _0764 Position (kb) 855 856 857Strain fitness (log2 ratio) -1 0 1at 855.484 kb on - strandat 855.484 kb on - strandat 855.484 kb on - strandat 855.484 kb on - strandat 855.486 kb on - strandat 855.486 kb on - strandat 855.486 kb on - strandat 855.498 kb on - strandat 855.519 kb on - strandat 855.519 kb on - strandat 856.475 kb on - strandat 856.475 kb on - strandat 856.475 kb on - strandat 856.475 kb on - strandat 856.489 kb on - strandat 856.489 kb on - strandat 856.501 kb on - strandat 856.603 kb on + strandat 856.604 kb on - strandat 856.605 kb on + strandat 856.605 kb on + strandat 856.605 kb on + strandat 856.606 kb on - strandat 856.606 kb on - strandat 856.682 kb on + strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.750 kb on + strand, within Echvi_0764at 856.750 kb on + strand, within Echvi_0764at 856.751 kb on - strand, within Echvi_0764at 856.751 kb on - strand, within Echvi_0764at 856.782 kb on - strand, within Echvi_0764at 856.814 kb on + strand, within Echvi_0764at 856.814 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.821 kb on - strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.942 kb on + strand, within Echvi_0764at 856.993 kb on + strand, within Echvi_0764at 857.009 kb on - strand, within Echvi_0764at 857.074 kb on + strand, within Echvi_0764at 857.141 kb on - strand, within Echvi_0764at 857.180 kb on + strand, within Echvi_0764at 857.317 kb on + strand, within Echvi_0764at 857.352 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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855,484 - +0.0
855,484 - +0.6
855,484 - +0.1
855,484 - +1.0
855,486 - -0.8
855,486 - -1.4
855,486 - +0.5
855,498 - -0.4
855,519 - +0.2
855,519 - +1.3
856,475 - +0.9
856,475 - -0.4
856,475 - +0.2
856,475 - +0.6
856,489 - +0.3
856,489 - -0.4
856,501 - -0.8
856,603 + +1.7
856,604 - +0.4
856,605 + +0.1
856,605 + -0.7
856,605 + +0.4
856,606 - -0.0
856,606 - -0.0
856,682 + Echvi_0764 0.15 -0.2
856,683 - Echvi_0764 0.15 -0.3
856,683 - Echvi_0764 0.15 -0.5
856,683 - Echvi_0764 0.15 +1.2
856,727 + Echvi_0764 0.19 +0.1
856,727 + Echvi_0764 0.19 -1.1
856,727 + Echvi_0764 0.19 +0.6
856,750 + Echvi_0764 0.21 -0.1
856,750 + Echvi_0764 0.21 -0.6
856,751 - Echvi_0764 0.21 -0.4
856,751 - Echvi_0764 0.21 -0.4
856,782 - Echvi_0764 0.24 -0.8
856,814 + Echvi_0764 0.27 +0.4
856,814 + Echvi_0764 0.27 +0.1
856,820 + Echvi_0764 0.28 -0.1
856,820 + Echvi_0764 0.28 +0.3
856,821 - Echvi_0764 0.28 -0.5
856,932 + Echvi_0764 0.39 +0.2
856,932 + Echvi_0764 0.39 -0.1
856,933 - Echvi_0764 0.39 -0.4
856,933 - Echvi_0764 0.39 -0.6
856,942 + Echvi_0764 0.40 -0.3
856,993 + Echvi_0764 0.44 -0.0
857,009 - Echvi_0764 0.46 +0.8
857,074 + Echvi_0764 0.52 +0.2
857,141 - Echvi_0764 0.59 +0.2
857,180 + Echvi_0764 0.62 -0.6
857,317 + Echvi_0764 0.75 +0.1
857,352 + Echvi_0764 0.79 -0.2
857,374 + Echvi_0764 0.81 +0.7
857,374 + Echvi_0764 0.81 -0.2

Or see this region's nucleotide sequence