Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0059

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0058 and Echvi_0059 overlap by 4 nucleotidesEchvi_0059 and Echvi_0060 are separated by 90 nucleotides Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148 _0058 Echvi_0059: Echvi_0059 - DNA polymerase III, subunit gamma and tau, at 56,145 to 57,865 _0059 Echvi_0060: Echvi_0060 - Predicted nucleoside-diphosphate sugar epimerases, at 57,956 to 59,830 _0060 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.170 kb on + strandat 55.170 kb on + strandat 55.187 kb on + strandat 55.257 kb on + strand, within Echvi_0058at 55.269 kb on + strand, within Echvi_0058at 55.270 kb on - strand, within Echvi_0058at 55.300 kb on - strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.314 kb on - strand, within Echvi_0058at 55.321 kb on - strand, within Echvi_0058at 55.345 kb on + strand, within Echvi_0058at 55.368 kb on - strand, within Echvi_0058at 55.431 kb on - strand, within Echvi_0058at 55.442 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.589 kb on - strand, within Echvi_0058at 55.635 kb on + strand, within Echvi_0058at 55.636 kb on - strand, within Echvi_0058at 55.640 kb on - strand, within Echvi_0058at 55.732 kb on + strand, within Echvi_0058at 55.755 kb on + strand, within Echvi_0058at 55.767 kb on + strand, within Echvi_0058at 55.772 kb on + strand, within Echvi_0058at 55.860 kb on - strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.991 kb on - strand, within Echvi_0058at 56.013 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.028 kb on + strand, within Echvi_0058at 56.102 kb on + strandat 56.103 kb on - strandat 57.991 kb on + strandat 57.991 kb on + strandat 57.991 kb on + strandat 57.992 kb on - strandat 58.003 kb on - strandat 58.015 kb on + strandat 58.015 kb on + strandat 58.016 kb on - strandat 58.016 kb on - strandat 58.021 kb on + strandat 58.022 kb on - strandat 58.024 kb on + strandat 58.024 kb on + strandat 58.025 kb on - strandat 58.025 kb on - strandat 58.025 kb on - strandat 58.058 kb on + strandat 58.087 kb on - strandat 58.097 kb on - strandat 58.154 kb on + strand, within Echvi_0060at 58.155 kb on - strand, within Echvi_0060at 58.155 kb on - strand, within Echvi_0060at 58.213 kb on + strand, within Echvi_0060at 58.217 kb on + strand, within Echvi_0060at 58.386 kb on + strand, within Echvi_0060at 58.386 kb on + strand, within Echvi_0060at 58.386 kb on + strand, within Echvi_0060at 58.414 kb on + strand, within Echvi_0060at 58.415 kb on - strand, within Echvi_0060at 58.476 kb on - strand, within Echvi_0060at 58.537 kb on - strand, within Echvi_0060at 58.558 kb on - strand, within Echvi_0060at 58.589 kb on + strand, within Echvi_0060at 58.589 kb on + strand, within Echvi_0060at 58.640 kb on + strand, within Echvi_0060at 58.640 kb on + strand, within Echvi_0060at 58.641 kb on - strand, within Echvi_0060at 58.645 kb on + strand, within Echvi_0060at 58.714 kb on - strand, within Echvi_0060at 58.755 kb on + strand, within Echvi_0060at 58.757 kb on + strand, within Echvi_0060at 58.757 kb on + strand, within Echvi_0060at 58.758 kb on - strand, within Echvi_0060at 58.758 kb on - strand, within Echvi_0060at 58.758 kb on - strand, within Echvi_0060at 58.758 kb on - strand, within Echvi_0060at 58.758 kb on - strand, within Echvi_0060at 58.763 kb on - strand, within Echvi_0060at 58.786 kb on + strand, within Echvi_0060at 58.786 kb on + strand, within Echvi_0060at 58.859 kb on - strand, within Echvi_0060

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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55,170 + -1.7
55,170 + -1.0
55,187 + +0.5
55,257 + Echvi_0058 0.10 -0.7
55,269 + Echvi_0058 0.11 -1.5
55,270 - Echvi_0058 0.11 -1.7
55,300 - Echvi_0058 0.15 -0.8
55,313 + Echvi_0058 0.16 -0.9
55,313 + Echvi_0058 0.16 -0.4
55,313 + Echvi_0058 0.16 -0.5
55,313 + Echvi_0058 0.16 -0.4
55,313 + Echvi_0058 0.16 -0.1
55,314 - Echvi_0058 0.16 -0.1
55,321 - Echvi_0058 0.17 -0.5
55,345 + Echvi_0058 0.19 -0.7
55,368 - Echvi_0058 0.21 -2.0
55,431 - Echvi_0058 0.28 -0.2
55,442 - Echvi_0058 0.29 +0.8
55,517 - Echvi_0058 0.36 -0.2
55,517 - Echvi_0058 0.36 -0.4
55,517 - Echvi_0058 0.36 +0.5
55,589 - Echvi_0058 0.44 -0.9
55,635 + Echvi_0058 0.48 -0.3
55,636 - Echvi_0058 0.48 +0.0
55,640 - Echvi_0058 0.49 -1.5
55,732 + Echvi_0058 0.58 -1.4
55,755 + Echvi_0058 0.60 -0.5
55,767 + Echvi_0058 0.62 +0.6
55,772 + Echvi_0058 0.62 +0.6
55,860 - Echvi_0058 0.71 +0.5
55,887 + Echvi_0058 0.74 +0.1
55,887 + Echvi_0058 0.74 +0.4
55,991 - Echvi_0058 0.84 +0.8
56,013 + Echvi_0058 0.86 -0.4
56,017 + Echvi_0058 0.87 +0.2
56,017 + Echvi_0058 0.87 +1.4
56,017 + Echvi_0058 0.87 +0.4
56,017 + Echvi_0058 0.87 -0.9
56,018 - Echvi_0058 0.87 -0.1
56,018 - Echvi_0058 0.87 +1.6
56,028 + Echvi_0058 0.88 -0.2
56,102 + -0.9
56,103 - -0.5
57,991 + -0.0
57,991 + +0.3
57,991 + +0.6
57,992 - +0.0
58,003 - -0.7
58,015 + +0.8
58,015 + -0.1
58,016 - -0.3
58,016 - +0.8
58,021 + +0.0
58,022 - +0.5
58,024 + +1.3
58,024 + -0.8
58,025 - +0.9
58,025 - -1.2
58,025 - +0.2
58,058 + +0.2
58,087 - +0.2
58,097 - +0.5
58,154 + Echvi_0060 0.11 +0.3
58,155 - Echvi_0060 0.11 +0.0
58,155 - Echvi_0060 0.11 +0.6
58,213 + Echvi_0060 0.14 +1.4
58,217 + Echvi_0060 0.14 -0.0
58,386 + Echvi_0060 0.23 +0.4
58,386 + Echvi_0060 0.23 +2.0
58,386 + Echvi_0060 0.23 +0.3
58,414 + Echvi_0060 0.24 +0.8
58,415 - Echvi_0060 0.24 +0.3
58,476 - Echvi_0060 0.28 +0.2
58,537 - Echvi_0060 0.31 +0.1
58,558 - Echvi_0060 0.32 +1.0
58,589 + Echvi_0060 0.34 +0.2
58,589 + Echvi_0060 0.34 -0.0
58,640 + Echvi_0060 0.36 +1.8
58,640 + Echvi_0060 0.36 +0.9
58,641 - Echvi_0060 0.37 +0.7
58,645 + Echvi_0060 0.37 -1.3
58,714 - Echvi_0060 0.40 -0.2
58,755 + Echvi_0060 0.43 -0.6
58,757 + Echvi_0060 0.43 +0.4
58,757 + Echvi_0060 0.43 -0.1
58,758 - Echvi_0060 0.43 -0.1
58,758 - Echvi_0060 0.43 -0.3
58,758 - Echvi_0060 0.43 +0.5
58,758 - Echvi_0060 0.43 +0.5
58,758 - Echvi_0060 0.43 +0.1
58,763 - Echvi_0060 0.43 +0.2
58,786 + Echvi_0060 0.44 +0.4
58,786 + Echvi_0060 0.44 -0.0
58,859 - Echvi_0060 0.48 +0.4

Or see this region's nucleotide sequence