Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3507

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3506 and Echvi_3507 are separated by 362 nucleotidesEchvi_3507 and Echvi_3508 are separated by 214 nucleotidesEchvi_3508 and Echvi_3509 are separated by 270 nucleotides Echvi_3506: Echvi_3506 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 4,156,308 to 4,157,399 _3506 Echvi_3507: Echvi_3507 - hypothetical protein, at 4,157,762 to 4,157,914 _3507 Echvi_3508: Echvi_3508 - Thioredoxin-related protein, at 4,158,129 to 4,158,584 _3508 Echvi_3509: Echvi_3509 - tRNA modification GTPase TrmE, at 4,158,855 to 4,160,237 _3509 Position (kb) 4157 4158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4156.789 kb on - strand, within Echvi_3506at 4156.810 kb on + strand, within Echvi_3506at 4156.811 kb on - strand, within Echvi_3506at 4156.869 kb on - strand, within Echvi_3506at 4156.869 kb on - strand, within Echvi_3506at 4156.869 kb on - strand, within Echvi_3506at 4156.907 kb on + strand, within Echvi_3506at 4156.907 kb on + strand, within Echvi_3506at 4156.966 kb on - strand, within Echvi_3506at 4156.966 kb on - strand, within Echvi_3506at 4156.969 kb on + strand, within Echvi_3506at 4156.969 kb on + strand, within Echvi_3506at 4156.983 kb on - strand, within Echvi_3506at 4156.983 kb on - strand, within Echvi_3506at 4156.983 kb on - strand, within Echvi_3506at 4157.016 kb on + strand, within Echvi_3506at 4157.016 kb on + strand, within Echvi_3506at 4157.017 kb on - strand, within Echvi_3506at 4157.017 kb on - strand, within Echvi_3506at 4157.017 kb on - strand, within Echvi_3506at 4157.019 kb on + strand, within Echvi_3506at 4157.041 kb on - strand, within Echvi_3506at 4157.041 kb on - strand, within Echvi_3506at 4157.051 kb on - strand, within Echvi_3506at 4157.095 kb on - strand, within Echvi_3506at 4157.126 kb on + strand, within Echvi_3506at 4157.127 kb on - strand, within Echvi_3506at 4157.128 kb on + strand, within Echvi_3506at 4157.128 kb on + strand, within Echvi_3506at 4157.128 kb on + strand, within Echvi_3506at 4157.164 kb on + strand, within Echvi_3506at 4157.193 kb on + strand, within Echvi_3506at 4157.194 kb on - strand, within Echvi_3506at 4157.194 kb on - strand, within Echvi_3506at 4157.197 kb on - strand, within Echvi_3506at 4157.238 kb on + strand, within Echvi_3506at 4157.238 kb on + strand, within Echvi_3506at 4157.301 kb on - strandat 4157.304 kb on - strandat 4157.315 kb on - strandat 4157.315 kb on - strandat 4157.405 kb on - strandat 4157.410 kb on - strandat 4157.410 kb on - strandat 4157.416 kb on - strandat 4157.508 kb on + strandat 4157.526 kb on + strandat 4157.526 kb on + strandat 4157.531 kb on + strandat 4157.546 kb on + strandat 4157.580 kb on + strandat 4157.582 kb on + strandat 4157.595 kb on - strandat 4157.625 kb on + strandat 4157.625 kb on + strandat 4157.631 kb on + strandat 4157.631 kb on + strandat 4157.632 kb on - strandat 4157.655 kb on + strandat 4157.655 kb on + strandat 4157.681 kb on - strandat 4157.681 kb on - strandat 4157.699 kb on - strandat 4157.706 kb on - strandat 4157.927 kb on + strandat 4157.975 kb on + strandat 4157.976 kb on - strandat 4157.994 kb on + strandat 4157.995 kb on - strandat 4158.021 kb on + strandat 4158.021 kb on + strandat 4158.041 kb on + strandat 4158.041 kb on + strandat 4158.042 kb on - strandat 4158.042 kb on - strandat 4158.045 kb on + strandat 4158.077 kb on - strandat 4158.102 kb on + strandat 4158.102 kb on + strandat 4158.114 kb on - strandat 4158.116 kb on + strandat 4158.140 kb on - strandat 4158.154 kb on + strandat 4158.175 kb on - strand, within Echvi_3508at 4158.191 kb on + strand, within Echvi_3508at 4158.191 kb on + strand, within Echvi_3508at 4158.210 kb on + strand, within Echvi_3508at 4158.210 kb on + strand, within Echvi_3508at 4158.210 kb on + strand, within Echvi_3508at 4158.273 kb on + strand, within Echvi_3508at 4158.273 kb on + strand, within Echvi_3508at 4158.273 kb on + strand, within Echvi_3508at 4158.274 kb on - strand, within Echvi_3508at 4158.274 kb on - strand, within Echvi_3508at 4158.335 kb on - strand, within Echvi_3508at 4158.342 kb on + strand, within Echvi_3508at 4158.386 kb on + strand, within Echvi_3508at 4158.420 kb on + strand, within Echvi_3508at 4158.463 kb on - strand, within Echvi_3508at 4158.504 kb on - strand, within Echvi_3508at 4158.539 kb on + strandat 4158.583 kb on - strandat 4158.597 kb on + strandat 4158.621 kb on + strandat 4158.721 kb on + strandat 4158.721 kb on + strandat 4158.722 kb on - strandat 4158.731 kb on - strandat 4158.735 kb on + strandat 4158.736 kb on - strandat 4158.781 kb on - strandat 4158.781 kb on - strandat 4158.784 kb on + strandat 4158.824 kb on - strandat 4158.841 kb on + strandat 4158.842 kb on - strandat 4158.843 kb on + strandat 4158.843 kb on + strandat 4158.844 kb on - strandat 4158.844 kb on - strandat 4158.848 kb on + strandat 4158.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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4,156,789 - Echvi_3506 0.44 -0.1
4,156,810 + Echvi_3506 0.46 +0.1
4,156,811 - Echvi_3506 0.46 +1.3
4,156,869 - Echvi_3506 0.51 -0.7
4,156,869 - Echvi_3506 0.51 +1.1
4,156,869 - Echvi_3506 0.51 -0.1
4,156,907 + Echvi_3506 0.55 +1.8
4,156,907 + Echvi_3506 0.55 -0.2
4,156,966 - Echvi_3506 0.60 +0.4
4,156,966 - Echvi_3506 0.60 +0.8
4,156,969 + Echvi_3506 0.61 +0.1
4,156,969 + Echvi_3506 0.61 -0.1
4,156,983 - Echvi_3506 0.62 -0.4
4,156,983 - Echvi_3506 0.62 +0.1
4,156,983 - Echvi_3506 0.62 +0.3
4,157,016 + Echvi_3506 0.65 +0.9
4,157,016 + Echvi_3506 0.65 +0.8
4,157,017 - Echvi_3506 0.65 -0.0
4,157,017 - Echvi_3506 0.65 -1.0
4,157,017 - Echvi_3506 0.65 -0.0
4,157,019 + Echvi_3506 0.65 -0.2
4,157,041 - Echvi_3506 0.67 -1.6
4,157,041 - Echvi_3506 0.67 +0.9
4,157,051 - Echvi_3506 0.68 -1.4
4,157,095 - Echvi_3506 0.72 +0.4
4,157,126 + Echvi_3506 0.75 +0.8
4,157,127 - Echvi_3506 0.75 +0.6
4,157,128 + Echvi_3506 0.75 +0.5
4,157,128 + Echvi_3506 0.75 -1.0
4,157,128 + Echvi_3506 0.75 -0.6
4,157,164 + Echvi_3506 0.78 +0.1
4,157,193 + Echvi_3506 0.81 -0.0
4,157,194 - Echvi_3506 0.81 +0.2
4,157,194 - Echvi_3506 0.81 -0.0
4,157,197 - Echvi_3506 0.81 +0.8
4,157,238 + Echvi_3506 0.85 +0.3
4,157,238 + Echvi_3506 0.85 -0.0
4,157,301 - -0.5
4,157,304 - -0.2
4,157,315 - -2.8
4,157,315 - +0.3
4,157,405 - +0.7
4,157,410 - -0.1
4,157,410 - +0.1
4,157,416 - -0.3
4,157,508 + -1.2
4,157,526 + +0.2
4,157,526 + -0.1
4,157,531 + -0.7
4,157,546 + -1.1
4,157,580 + -0.7
4,157,582 + +0.0
4,157,595 - +0.6
4,157,625 + -0.0
4,157,625 + +0.6
4,157,631 + -0.4
4,157,631 + +0.2
4,157,632 - -0.9
4,157,655 + +1.0
4,157,655 + -0.4
4,157,681 - -0.6
4,157,681 - +0.5
4,157,699 - -0.2
4,157,706 - -2.1
4,157,927 + -0.5
4,157,975 + -1.2
4,157,976 - -0.9
4,157,994 + +0.3
4,157,995 - -0.1
4,158,021 + -0.1
4,158,021 + +2.6
4,158,041 + +0.4
4,158,041 + -0.6
4,158,042 - +2.3
4,158,042 - +0.3
4,158,045 + +0.5
4,158,077 - -0.0
4,158,102 + +0.4
4,158,102 + +0.8
4,158,114 - -0.4
4,158,116 + +0.3
4,158,140 - -0.6
4,158,154 + -0.1
4,158,175 - Echvi_3508 0.10 +0.4
4,158,191 + Echvi_3508 0.14 +0.0
4,158,191 + Echvi_3508 0.14 +0.1
4,158,210 + Echvi_3508 0.18 -0.7
4,158,210 + Echvi_3508 0.18 +0.2
4,158,210 + Echvi_3508 0.18 -0.1
4,158,273 + Echvi_3508 0.32 -0.5
4,158,273 + Echvi_3508 0.32 -0.6
4,158,273 + Echvi_3508 0.32 -1.1
4,158,274 - Echvi_3508 0.32 +0.1
4,158,274 - Echvi_3508 0.32 +0.7
4,158,335 - Echvi_3508 0.45 +1.3
4,158,342 + Echvi_3508 0.47 -0.2
4,158,386 + Echvi_3508 0.56 +0.9
4,158,420 + Echvi_3508 0.64 +0.3
4,158,463 - Echvi_3508 0.73 -0.6
4,158,504 - Echvi_3508 0.82 -0.9
4,158,539 + -0.7
4,158,583 - +0.0
4,158,597 + +0.0
4,158,621 + -2.0
4,158,721 + -1.2
4,158,721 + +1.0
4,158,722 - -0.4
4,158,731 - +0.2
4,158,735 + -0.3
4,158,736 - -0.4
4,158,781 - +0.4
4,158,781 - +0.0
4,158,784 + +0.3
4,158,824 - -0.4
4,158,841 + +0.6
4,158,842 - -0.3
4,158,843 + -0.2
4,158,843 + +1.8
4,158,844 - +1.3
4,158,844 - +0.3
4,158,848 + -0.1
4,158,849 - +0.5

Or see this region's nucleotide sequence