Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3503 and Echvi_3504 are separated by 70 nucleotides Echvi_3504 and Echvi_3505 are separated by 97 nucleotides Echvi_3505 and Echvi_3506 are separated by 13 nucleotides
Echvi_3503: Echvi_3503 - hypothetical protein, at 4,153,620 to 4,154,918
_3503
Echvi_3504: Echvi_3504 - Redoxin., at 4,154,989 to 4,156,095
_3504
Echvi_3505: Echvi_3505 - hypothetical protein, at 4,156,193 to 4,156,294
_3505
Echvi_3506: Echvi_3506 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 4,156,308 to 4,157,399
_3506
Position (kb)
4154
4155
4156
4157 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4154.033 kb on - strand, within Echvi_3503 at 4154.033 kb on - strand, within Echvi_3503 at 4154.077 kb on - strand, within Echvi_3503 at 4154.137 kb on - strand, within Echvi_3503 at 4154.183 kb on + strand, within Echvi_3503 at 4154.203 kb on + strand, within Echvi_3503 at 4154.238 kb on + strand, within Echvi_3503 at 4154.317 kb on + strand, within Echvi_3503 at 4154.318 kb on - strand, within Echvi_3503 at 4154.318 kb on - strand, within Echvi_3503 at 4154.318 kb on - strand, within Echvi_3503 at 4154.318 kb on - strand, within Echvi_3503 at 4154.366 kb on + strand, within Echvi_3503 at 4154.367 kb on - strand, within Echvi_3503 at 4154.428 kb on - strand, within Echvi_3503 at 4154.428 kb on - strand, within Echvi_3503 at 4154.428 kb on - strand, within Echvi_3503 at 4154.469 kb on + strand, within Echvi_3503 at 4154.470 kb on - strand, within Echvi_3503 at 4154.508 kb on + strand, within Echvi_3503 at 4154.508 kb on + strand, within Echvi_3503 at 4154.508 kb on + strand, within Echvi_3503 at 4154.508 kb on + strand, within Echvi_3503 at 4154.508 kb on + strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.509 kb on - strand, within Echvi_3503 at 4154.576 kb on + strand, within Echvi_3503 at 4154.576 kb on + strand, within Echvi_3503 at 4154.577 kb on - strand, within Echvi_3503 at 4154.579 kb on + strand, within Echvi_3503 at 4154.580 kb on - strand, within Echvi_3503 at 4154.591 kb on + strand, within Echvi_3503 at 4154.591 kb on + strand, within Echvi_3503 at 4154.592 kb on - strand, within Echvi_3503 at 4154.592 kb on - strand, within Echvi_3503 at 4154.599 kb on + strand, within Echvi_3503 at 4154.599 kb on + strand, within Echvi_3503 at 4154.624 kb on + strand at 4154.634 kb on + strand, within Echvi_3503 at 4154.634 kb on + strand, within Echvi_3503 at 4154.635 kb on - strand, within Echvi_3503 at 4154.655 kb on + strand, within Echvi_3503 at 4154.656 kb on - strand, within Echvi_3503 at 4154.656 kb on - strand, within Echvi_3503 at 4154.670 kb on + strand, within Echvi_3503 at 4154.706 kb on + strand, within Echvi_3503 at 4154.767 kb on + strand, within Echvi_3503 at 4154.784 kb on - strand, within Echvi_3503 at 4154.796 kb on + strand at 4154.851 kb on - strand at 4154.931 kb on - strand at 4154.960 kb on - strand at 4154.960 kb on - strand at 4154.960 kb on - strand at 4154.961 kb on + strand at 4154.969 kb on + strand at 4154.969 kb on + strand at 4154.970 kb on - strand at 4154.970 kb on - strand at 4154.977 kb on + strand at 4155.032 kb on + strand at 4155.032 kb on + strand at 4155.033 kb on - strand at 4155.033 kb on - strand at 4155.033 kb on - strand at 4155.033 kb on - strand at 4155.033 kb on - strand at 4155.036 kb on + strand at 4155.196 kb on - strand, within Echvi_3504 at 4155.204 kb on + strand, within Echvi_3504 at 4155.205 kb on - strand, within Echvi_3504 at 4155.209 kb on - strand, within Echvi_3504 at 4155.232 kb on + strand, within Echvi_3504 at 4155.286 kb on + strand, within Echvi_3504 at 4155.319 kb on + strand, within Echvi_3504 at 4155.515 kb on + strand, within Echvi_3504 at 4155.519 kb on + strand, within Echvi_3504 at 4155.519 kb on + strand, within Echvi_3504 at 4155.520 kb on - strand, within Echvi_3504 at 4155.552 kb on + strand, within Echvi_3504 at 4155.580 kb on + strand, within Echvi_3504 at 4155.581 kb on - strand, within Echvi_3504 at 4155.690 kb on + strand, within Echvi_3504 at 4155.720 kb on + strand, within Echvi_3504 at 4155.721 kb on - strand, within Echvi_3504 at 4155.768 kb on + strand, within Echvi_3504 at 4155.801 kb on + strand, within Echvi_3504 at 4155.899 kb on + strand, within Echvi_3504 at 4155.899 kb on + strand, within Echvi_3504 at 4155.899 kb on + strand, within Echvi_3504 at 4155.903 kb on + strand, within Echvi_3504 at 4155.969 kb on + strand, within Echvi_3504 at 4155.970 kb on - strand, within Echvi_3504 at 4155.970 kb on - strand, within Echvi_3504 at 4155.999 kb on + strand at 4156.000 kb on - strand at 4156.003 kb on + strand at 4156.003 kb on + strand at 4156.003 kb on + strand at 4156.003 kb on + strand at 4156.003 kb on + strand at 4156.004 kb on - strand at 4156.104 kb on + strand at 4156.178 kb on + strand at 4156.201 kb on - strand at 4156.223 kb on + strand, within Echvi_3505 at 4156.267 kb on + strand, within Echvi_3505 at 4156.294 kb on + strand at 4156.294 kb on + strand at 4156.295 kb on - strand at 4156.296 kb on + strand at 4156.296 kb on + strand at 4156.296 kb on + strand at 4156.296 kb on + strand at 4156.297 kb on - strand at 4156.297 kb on - strand at 4156.297 kb on - strand at 4156.297 kb on - strand at 4156.310 kb on - strand at 4156.361 kb on + strand at 4156.362 kb on - strand at 4156.457 kb on - strand, within Echvi_3506 at 4156.457 kb on - strand, within Echvi_3506 at 4156.457 kb on - strand, within Echvi_3506 at 4156.499 kb on + strand, within Echvi_3506 at 4156.499 kb on + strand, within Echvi_3506 at 4156.499 kb on + strand, within Echvi_3506 at 4156.500 kb on - strand, within Echvi_3506 at 4156.500 kb on - strand, within Echvi_3506 at 4156.500 kb on - strand, within Echvi_3506 at 4156.502 kb on - strand, within Echvi_3506 at 4156.527 kb on - strand, within Echvi_3506 at 4156.548 kb on + strand, within Echvi_3506 at 4156.559 kb on + strand, within Echvi_3506 at 4156.559 kb on + strand, within Echvi_3506 at 4156.615 kb on - strand, within Echvi_3506 at 4156.637 kb on - strand, within Echvi_3506 at 4156.680 kb on + strand, within Echvi_3506 at 4156.680 kb on + strand, within Echvi_3506 at 4156.681 kb on - strand, within Echvi_3506 at 4156.789 kb on - strand, within Echvi_3506 at 4156.810 kb on + strand, within Echvi_3506 at 4156.811 kb on - strand, within Echvi_3506 at 4156.869 kb on - strand, within Echvi_3506 at 4156.869 kb on - strand, within Echvi_3506 at 4156.869 kb on - strand, within Echvi_3506 at 4156.907 kb on + strand, within Echvi_3506 at 4156.907 kb on + strand, within Echvi_3506 at 4156.966 kb on - strand, within Echvi_3506 at 4156.966 kb on - strand, within Echvi_3506 at 4156.969 kb on + strand, within Echvi_3506 at 4156.969 kb on + strand, within Echvi_3506 at 4156.983 kb on - strand, within Echvi_3506 at 4156.983 kb on - strand, within Echvi_3506 at 4156.983 kb on - strand, within Echvi_3506 at 4157.016 kb on + strand, within Echvi_3506 at 4157.016 kb on + strand, within Echvi_3506 at 4157.017 kb on - strand, within Echvi_3506 at 4157.017 kb on - strand, within Echvi_3506 at 4157.017 kb on - strand, within Echvi_3506 at 4157.019 kb on + strand, within Echvi_3506 at 4157.041 kb on - strand, within Echvi_3506 at 4157.041 kb on - strand, within Echvi_3506 at 4157.051 kb on - strand, within Echvi_3506 at 4157.095 kb on - strand, within Echvi_3506
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 4,154,033 - Echvi_3503 0.32 +0.0 4,154,033 - Echvi_3503 0.32 -0.4 4,154,077 - Echvi_3503 0.35 +0.2 4,154,137 - Echvi_3503 0.40 -0.7 4,154,183 + Echvi_3503 0.43 -0.4 4,154,203 + Echvi_3503 0.45 -0.7 4,154,238 + Echvi_3503 0.48 -0.6 4,154,317 + Echvi_3503 0.54 +0.4 4,154,318 - Echvi_3503 0.54 +0.6 4,154,318 - Echvi_3503 0.54 +0.1 4,154,318 - Echvi_3503 0.54 -0.5 4,154,318 - Echvi_3503 0.54 +1.0 4,154,366 + Echvi_3503 0.57 +0.6 4,154,367 - Echvi_3503 0.58 -0.2 4,154,428 - Echvi_3503 0.62 +0.0 4,154,428 - Echvi_3503 0.62 -0.7 4,154,428 - Echvi_3503 0.62 -0.6 4,154,469 + Echvi_3503 0.65 -0.0 4,154,470 - Echvi_3503 0.65 +0.3 4,154,508 + Echvi_3503 0.68 -0.2 4,154,508 + Echvi_3503 0.68 +0.7 4,154,508 + Echvi_3503 0.68 -0.1 4,154,508 + Echvi_3503 0.68 -0.2 4,154,508 + Echvi_3503 0.68 -0.5 4,154,509 - Echvi_3503 0.68 -0.3 4,154,509 - Echvi_3503 0.68 -0.3 4,154,509 - Echvi_3503 0.68 -0.4 4,154,509 - Echvi_3503 0.68 +0.1 4,154,509 - Echvi_3503 0.68 -0.2 4,154,509 - Echvi_3503 0.68 -0.4 4,154,576 + Echvi_3503 0.74 +0.3 4,154,576 + Echvi_3503 0.74 +0.4 4,154,577 - Echvi_3503 0.74 -0.3 4,154,579 + Echvi_3503 0.74 +1.0 4,154,580 - Echvi_3503 0.74 -1.0 4,154,591 + Echvi_3503 0.75 +0.5 4,154,591 + Echvi_3503 0.75 -0.5 4,154,592 - Echvi_3503 0.75 -0.1 4,154,592 - Echvi_3503 0.75 +1.0 4,154,599 + Echvi_3503 0.75 +1.2 4,154,599 + Echvi_3503 0.75 -0.1 4,154,624 + -0.0 4,154,634 + Echvi_3503 0.78 -0.3 4,154,634 + Echvi_3503 0.78 -0.7 4,154,635 - Echvi_3503 0.78 -2.1 4,154,655 + Echvi_3503 0.80 -0.0 4,154,656 - Echvi_3503 0.80 +0.8 4,154,656 - Echvi_3503 0.80 +0.3 4,154,670 + Echvi_3503 0.81 +0.3 4,154,706 + Echvi_3503 0.84 +0.0 4,154,767 + Echvi_3503 0.88 +1.1 4,154,784 - Echvi_3503 0.90 -0.5 4,154,796 + +0.7 4,154,851 - -0.1 4,154,931 - -0.2 4,154,960 - -1.3 4,154,960 - -0.0 4,154,960 - +0.3 4,154,961 + -0.3 4,154,969 + +1.1 4,154,969 + -0.3 4,154,970 - -0.2 4,154,970 - +1.1 4,154,977 + +0.3 4,155,032 + +0.8 4,155,032 + -0.4 4,155,033 - -0.1 4,155,033 - +0.6 4,155,033 - +0.4 4,155,033 - -0.7 4,155,033 - +0.4 4,155,036 + -0.4 4,155,196 - Echvi_3504 0.19 -0.9 4,155,204 + Echvi_3504 0.19 -1.1 4,155,205 - Echvi_3504 0.20 +0.5 4,155,209 - Echvi_3504 0.20 +0.3 4,155,232 + Echvi_3504 0.22 +0.0 4,155,286 + Echvi_3504 0.27 -0.6 4,155,319 + Echvi_3504 0.30 -0.1 4,155,515 + Echvi_3504 0.48 -0.2 4,155,519 + Echvi_3504 0.48 +0.4 4,155,519 + Echvi_3504 0.48 -0.2 4,155,520 - Echvi_3504 0.48 +0.2 4,155,552 + Echvi_3504 0.51 -1.6 4,155,580 + Echvi_3504 0.53 -0.3 4,155,581 - Echvi_3504 0.53 -0.2 4,155,690 + Echvi_3504 0.63 +0.2 4,155,720 + Echvi_3504 0.66 +0.7 4,155,721 - Echvi_3504 0.66 +0.3 4,155,768 + Echvi_3504 0.70 +0.7 4,155,801 + Echvi_3504 0.73 +1.0 4,155,899 + Echvi_3504 0.82 +0.3 4,155,899 + Echvi_3504 0.82 +0.0 4,155,899 + Echvi_3504 0.82 -0.4 4,155,903 + Echvi_3504 0.83 -0.4 4,155,969 + Echvi_3504 0.89 -0.7 4,155,970 - Echvi_3504 0.89 -0.5 4,155,970 - Echvi_3504 0.89 -0.7 4,155,999 + -0.3 4,156,000 - -0.3 4,156,003 + +0.7 4,156,003 + -0.2 4,156,003 + -0.3 4,156,003 + +0.0 4,156,003 + -0.8 4,156,004 - +0.5 4,156,104 + -0.4 4,156,178 + -0.1 4,156,201 - +0.3 4,156,223 + Echvi_3505 0.29 -0.9 4,156,267 + Echvi_3505 0.73 -0.7 4,156,294 + +0.1 4,156,294 + -0.6 4,156,295 - +0.4 4,156,296 + +0.4 4,156,296 + +0.2 4,156,296 + -1.3 4,156,296 + +0.1 4,156,297 - +0.9 4,156,297 - -0.6 4,156,297 - -1.3 4,156,297 - -0.4 4,156,310 - +1.6 4,156,361 + -0.7 4,156,362 - -1.1 4,156,457 - Echvi_3506 0.14 -0.3 4,156,457 - Echvi_3506 0.14 +0.5 4,156,457 - Echvi_3506 0.14 -0.4 4,156,499 + Echvi_3506 0.17 -0.2 4,156,499 + Echvi_3506 0.17 +0.7 4,156,499 + Echvi_3506 0.17 +0.1 4,156,500 - Echvi_3506 0.18 +1.4 4,156,500 - Echvi_3506 0.18 +0.4 4,156,500 - Echvi_3506 0.18 +0.4 4,156,502 - Echvi_3506 0.18 -0.2 4,156,527 - Echvi_3506 0.20 +0.4 4,156,548 + Echvi_3506 0.22 +1.6 4,156,559 + Echvi_3506 0.23 -0.3 4,156,559 + Echvi_3506 0.23 +0.6 4,156,615 - Echvi_3506 0.28 +0.5 4,156,637 - Echvi_3506 0.30 +1.6 4,156,680 + Echvi_3506 0.34 -1.1 4,156,680 + Echvi_3506 0.34 +0.5 4,156,681 - Echvi_3506 0.34 -0.5 4,156,789 - Echvi_3506 0.44 -0.1 4,156,810 + Echvi_3506 0.46 +0.1 4,156,811 - Echvi_3506 0.46 +1.3 4,156,869 - Echvi_3506 0.51 -0.7 4,156,869 - Echvi_3506 0.51 +1.1 4,156,869 - Echvi_3506 0.51 -0.1 4,156,907 + Echvi_3506 0.55 +1.8 4,156,907 + Echvi_3506 0.55 -0.2 4,156,966 - Echvi_3506 0.60 +0.4 4,156,966 - Echvi_3506 0.60 +0.8 4,156,969 + Echvi_3506 0.61 +0.1 4,156,969 + Echvi_3506 0.61 -0.1 4,156,983 - Echvi_3506 0.62 -0.4 4,156,983 - Echvi_3506 0.62 +0.1 4,156,983 - Echvi_3506 0.62 +0.3 4,157,016 + Echvi_3506 0.65 +0.9 4,157,016 + Echvi_3506 0.65 +0.8 4,157,017 - Echvi_3506 0.65 -0.0 4,157,017 - Echvi_3506 0.65 -1.0 4,157,017 - Echvi_3506 0.65 -0.0 4,157,019 + Echvi_3506 0.65 -0.2 4,157,041 - Echvi_3506 0.67 -1.6 4,157,041 - Echvi_3506 0.67 +0.9 4,157,051 - Echvi_3506 0.68 -1.4 4,157,095 - Echvi_3506 0.72 +0.4
Or see this region's nucleotide sequence