Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4091 and Echvi_4092 are separated by 12 nucleotides Echvi_4092 and Echvi_4093 are separated by 6 nucleotides Echvi_4093 and Echvi_4094 overlap by 20 nucleotides Echvi_4094 and Echvi_4095 are separated by 5 nucleotides Echvi_4095 and Echvi_4096 are separated by 3 nucleotides
Echvi_4091: Echvi_4091 - hypothetical protein, at 4,909,977 to 4,910,714
_4091
Echvi_4092: Echvi_4092 - hypothetical protein, at 4,910,727 to 4,911,584
_4092
Echvi_4093: Echvi_4093 - Bacteroides conjugative transposon TraM protein, at 4,911,591 to 4,912,769
_4093
Echvi_4094: Echvi_4094 - hypothetical protein, at 4,912,750 to 4,913,049
_4094
Echvi_4095: Echvi_4095 - Bacteroides conjugative transposon TraK protein, at 4,913,055 to 4,913,672
_4095
Echvi_4096: Echvi_4096 - Bacteroides conjugative transposon TraJ protein, at 4,913,676 to 4,914,695
_4096
Position (kb)
4911
4912
4913 Strain fitness (log2 ratio)
-1
0
1
2 at 4910.672 kb on - strand at 4910.689 kb on - strand at 4910.728 kb on + strand at 4910.728 kb on + strand at 4910.729 kb on - strand at 4910.779 kb on - strand at 4910.931 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.186 kb on + strand, within Echvi_4092 at 4911.187 kb on - strand, within Echvi_4092 at 4911.189 kb on - strand, within Echvi_4092 at 4911.232 kb on - strand, within Echvi_4092 at 4911.236 kb on + strand, within Echvi_4092 at 4911.251 kb on + strand, within Echvi_4092 at 4911.268 kb on + strand, within Echvi_4092 at 4911.269 kb on - strand, within Echvi_4092 at 4911.356 kb on + strand, within Echvi_4092 at 4911.479 kb on - strand, within Echvi_4092 at 4911.503 kb on + strand at 4911.503 kb on + strand at 4911.505 kb on + strand at 4911.505 kb on + strand at 4911.506 kb on - strand at 4911.506 kb on - strand at 4911.506 kb on - strand at 4911.506 kb on - strand at 4911.506 kb on - strand at 4911.547 kb on - strand at 4911.631 kb on - strand at 4911.747 kb on + strand, within Echvi_4093 at 4911.747 kb on + strand, within Echvi_4093 at 4911.748 kb on - strand, within Echvi_4093 at 4911.871 kb on - strand, within Echvi_4093 at 4911.939 kb on + strand, within Echvi_4093 at 4912.022 kb on - strand, within Echvi_4093 at 4912.088 kb on - strand, within Echvi_4093 at 4912.227 kb on + strand, within Echvi_4093 at 4912.497 kb on + strand, within Echvi_4093 at 4912.610 kb on + strand, within Echvi_4093 at 4912.647 kb on + strand, within Echvi_4093 at 4912.801 kb on - strand, within Echvi_4094 at 4912.964 kb on + strand, within Echvi_4094 at 4912.965 kb on - strand, within Echvi_4094 at 4912.965 kb on - strand, within Echvi_4094 at 4913.222 kb on - strand, within Echvi_4095 at 4913.240 kb on - strand, within Echvi_4095 at 4913.259 kb on + strand, within Echvi_4095 at 4913.260 kb on - strand, within Echvi_4095 at 4913.338 kb on + strand, within Echvi_4095 at 4913.506 kb on - strand, within Echvi_4095 at 4913.525 kb on + strand, within Echvi_4095 at 4913.525 kb on + strand, within Echvi_4095 at 4913.525 kb on + strand, within Echvi_4095 at 4913.525 kb on + strand, within Echvi_4095 at 4913.526 kb on - strand, within Echvi_4095 at 4913.526 kb on - strand, within Echvi_4095 at 4913.526 kb on - strand, within Echvi_4095 at 4913.528 kb on - strand, within Echvi_4095 at 4913.528 kb on - strand, within Echvi_4095 at 4913.529 kb on + strand, within Echvi_4095 at 4913.530 kb on - strand, within Echvi_4095 at 4913.629 kb on - strand at 4913.629 kb on - strand at 4913.629 kb on - strand at 4913.652 kb on - strand at 4913.677 kb on + strand at 4913.677 kb on + strand at 4913.678 kb on - strand at 4913.679 kb on + strand at 4913.736 kb on + strand at 4913.736 kb on + strand at 4913.736 kb on + strand at 4913.737 kb on - strand at 4913.738 kb on + strand at 4913.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 4,910,672 - +0.5 4,910,689 - -0.1 4,910,728 + +0.2 4,910,728 + +0.4 4,910,729 - -0.3 4,910,779 - -0.3 4,910,931 + Echvi_4092 0.24 +0.5 4,911,186 + Echvi_4092 0.53 -0.5 4,911,186 + Echvi_4092 0.53 -0.9 4,911,186 + Echvi_4092 0.53 +0.2 4,911,186 + Echvi_4092 0.53 +0.2 4,911,186 + Echvi_4092 0.53 -0.2 4,911,186 + Echvi_4092 0.53 +1.2 4,911,187 - Echvi_4092 0.54 -0.1 4,911,189 - Echvi_4092 0.54 -1.0 4,911,232 - Echvi_4092 0.59 +1.0 4,911,236 + Echvi_4092 0.59 +0.4 4,911,251 + Echvi_4092 0.61 +0.5 4,911,268 + Echvi_4092 0.63 +0.0 4,911,269 - Echvi_4092 0.63 +0.0 4,911,356 + Echvi_4092 0.73 +0.1 4,911,479 - Echvi_4092 0.88 -0.2 4,911,503 + +0.1 4,911,503 + +0.2 4,911,505 + -0.8 4,911,505 + +0.3 4,911,506 - +0.1 4,911,506 - -0.1 4,911,506 - -1.0 4,911,506 - +0.9 4,911,506 - +0.3 4,911,547 - +1.2 4,911,631 - -0.3 4,911,747 + Echvi_4093 0.13 +1.0 4,911,747 + Echvi_4093 0.13 +0.8 4,911,748 - Echvi_4093 0.13 +0.9 4,911,871 - Echvi_4093 0.24 +0.5 4,911,939 + Echvi_4093 0.30 +0.3 4,912,022 - Echvi_4093 0.37 +0.2 4,912,088 - Echvi_4093 0.42 +1.0 4,912,227 + Echvi_4093 0.54 +0.7 4,912,497 + Echvi_4093 0.77 -0.1 4,912,610 + Echvi_4093 0.86 +0.6 4,912,647 + Echvi_4093 0.90 +0.3 4,912,801 - Echvi_4094 0.17 -0.2 4,912,964 + Echvi_4094 0.71 -0.2 4,912,965 - Echvi_4094 0.72 -0.7 4,912,965 - Echvi_4094 0.72 -0.3 4,913,222 - Echvi_4095 0.27 +0.5 4,913,240 - Echvi_4095 0.30 -1.1 4,913,259 + Echvi_4095 0.33 -0.3 4,913,260 - Echvi_4095 0.33 +0.5 4,913,338 + Echvi_4095 0.46 -0.0 4,913,506 - Echvi_4095 0.73 -0.2 4,913,525 + Echvi_4095 0.76 -0.0 4,913,525 + Echvi_4095 0.76 -0.2 4,913,525 + Echvi_4095 0.76 +0.2 4,913,525 + Echvi_4095 0.76 -0.2 4,913,526 - Echvi_4095 0.76 +1.7 4,913,526 - Echvi_4095 0.76 -1.3 4,913,526 - Echvi_4095 0.76 +2.1 4,913,528 - Echvi_4095 0.77 -1.0 4,913,528 - Echvi_4095 0.77 +0.4 4,913,529 + Echvi_4095 0.77 +0.2 4,913,530 - Echvi_4095 0.77 +0.3 4,913,629 - -1.5 4,913,629 - -0.7 4,913,629 - +0.1 4,913,652 - +0.1 4,913,677 + -0.1 4,913,677 + -0.6 4,913,678 - +0.4 4,913,679 + -0.3 4,913,736 + +0.1 4,913,736 + -0.4 4,913,736 + +0.1 4,913,737 - -1.1 4,913,738 + +0.6 4,913,757 + -0.0
Or see this region's nucleotide sequence