Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1664

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1662 and Psyr_1663 are separated by 61 nucleotidesPsyr_1663 and Psyr_1664 are separated by 252 nucleotidesPsyr_1664 and Psyr_1665 overlap by 4 nucleotides Psyr_1662: Psyr_1662 - tRNA pseudouridine synthase, at 1,867,089 to 1,867,943 _1662 Psyr_1663: Psyr_1663 - phosphoribosylanthranilate isomerase, at 1,868,005 to 1,868,625 _1663 Psyr_1664: Psyr_1664 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,868,878 to 1,869,798 _1664 Psyr_1665: Psyr_1665 - Folylpolyglutamate synthetase, at 1,869,795 to 1,871,099 _1665 Position (kb) 1868 1869 1870Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1867.896 kb on + strandat 1867.896 kb on + strandat 1868.046 kb on - strandat 1868.149 kb on - strand, within Psyr_1663at 1868.303 kb on - strand, within Psyr_1663at 1868.359 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.797 kb on + strandat 1868.797 kb on + strandat 1869.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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1,867,896 + -0.6
1,867,896 + +0.1
1,868,046 - -2.6
1,868,149 - Psyr_1663 0.23 -0.1
1,868,303 - Psyr_1663 0.48 -2.4
1,868,359 + Psyr_1663 0.57 -1.5
1,868,392 + Psyr_1663 0.62 -2.7
1,868,392 + Psyr_1663 0.62 -3.8
1,868,392 + Psyr_1663 0.62 -2.7
1,868,797 + -0.7
1,868,797 + +0.6
1,869,803 + -0.9

Or see this region's nucleotide sequence