Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0810

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0809 and Psyr_0810 are separated by 51 nucleotidesPsyr_0810 and Psyr_0811 are separated by 26 nucleotides Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Psyr_0810: Psyr_0810 - Tellurite resistance TerB, at 915,473 to 915,922 _0810 Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Position (kb) 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.092 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.384 kb on - strandat 915.419 kb on + strandat 915.419 kb on + strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.427 kb on - strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.933 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.947 kb on - strandat 915.965 kb on + strandat 915.965 kb on + strandat 915.965 kb on + strandat 916.129 kb on + strand, within Psyr_0811at 916.129 kb on + strand, within Psyr_0811at 916.129 kb on + strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.175 kb on - strand, within Psyr_0811at 916.281 kb on + strand, within Psyr_0811at 916.282 kb on - strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.438 kb on + strand, within Psyr_0811at 916.456 kb on + strand, within Psyr_0811at 916.457 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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914,537 + Psyr_0809 0.24 -0.3
914,537 + Psyr_0809 0.24 -0.4
914,537 + Psyr_0809 0.24 -1.9
914,537 + Psyr_0809 0.24 +0.6
914,537 + Psyr_0809 0.24 -3.4
914,537 + Psyr_0809 0.24 -1.0
914,537 + Psyr_0809 0.24 +0.2
914,538 - Psyr_0809 0.24 +0.0
914,538 - Psyr_0809 0.24 -1.8
914,538 - Psyr_0809 0.24 -1.1
914,538 - Psyr_0809 0.24 +0.1
914,538 - Psyr_0809 0.24 +0.2
914,538 - Psyr_0809 0.24 +0.6
914,538 - Psyr_0809 0.24 -1.7
914,538 - Psyr_0809 0.24 +2.1
914,538 - Psyr_0809 0.24 +0.2
914,538 - Psyr_0809 0.24 -1.1
914,658 - Psyr_0809 0.35 +0.7
914,658 - Psyr_0809 0.35 -3.3
914,658 - Psyr_0809 0.35 +0.2
914,658 - Psyr_0809 0.35 +0.2
914,658 - Psyr_0809 0.35 -2.3
914,658 - Psyr_0809 0.35 -0.3
914,658 - Psyr_0809 0.35 +2.5
914,947 + Psyr_0809 0.59 +1.3
914,947 + Psyr_0809 0.59 -0.3
914,959 + Psyr_0809 0.60 -0.2
914,960 - Psyr_0809 0.61 -0.3
914,960 - Psyr_0809 0.61 +1.2
914,979 + Psyr_0809 0.62 -1.0
914,979 + Psyr_0809 0.62 +0.3
914,979 + Psyr_0809 0.62 -1.4
914,979 + Psyr_0809 0.62 +0.1
914,979 + Psyr_0809 0.62 +0.3
914,980 - Psyr_0809 0.62 -1.7
914,980 - Psyr_0809 0.62 +2.7
914,980 - Psyr_0809 0.62 +0.1
914,980 - Psyr_0809 0.62 -1.3
915,092 - Psyr_0809 0.72 +1.7
915,124 + Psyr_0809 0.75 +0.6
915,179 + Psyr_0809 0.79 -0.4
915,179 + Psyr_0809 0.79 -0.2
915,179 + Psyr_0809 0.79 -0.7
915,179 + Psyr_0809 0.79 +1.8
915,179 + Psyr_0809 0.79 -1.0
915,179 + Psyr_0809 0.79 +1.2
915,179 + Psyr_0809 0.79 -0.4
915,180 - Psyr_0809 0.79 -0.4
915,180 - Psyr_0809 0.79 -1.9
915,180 - Psyr_0809 0.79 +0.8
915,180 - Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 -0.7
915,180 - Psyr_0809 0.79 -1.7
915,180 - Psyr_0809 0.79 -0.1
915,180 - Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 +0.6
915,180 - Psyr_0809 0.79 +0.4
915,180 - Psyr_0809 0.79 -2.0
915,180 - Psyr_0809 0.79 +1.6
915,180 - Psyr_0809 0.79 -1.4
915,180 - Psyr_0809 0.79 -1.4
915,180 - Psyr_0809 0.79 -2.1
915,180 - Psyr_0809 0.79 +0.9
915,180 - Psyr_0809 0.79 -2.2
915,180 - Psyr_0809 0.79 -0.4
915,384 - -0.2
915,419 + -1.0
915,419 + -0.6
915,420 - +0.2
915,420 - +1.0
915,427 - -1.1
915,434 + -0.3
915,435 - -0.8
915,435 - -2.4
915,435 - -1.3
915,469 - -1.8
915,469 - +0.2
915,469 - -1.4
915,933 + -0.5
915,946 + +0.0
915,946 + -1.9
915,946 + -2.8
915,946 + -0.8
915,946 + -1.1
915,947 - -2.0
915,965 + -2.6
915,965 + -1.3
915,965 + +0.6
916,129 + Psyr_0811 0.17 -0.7
916,129 + Psyr_0811 0.17 -2.1
916,129 + Psyr_0811 0.17 -1.9
916,130 - Psyr_0811 0.17 -0.9
916,130 - Psyr_0811 0.17 +0.3
916,130 - Psyr_0811 0.17 +1.7
916,130 - Psyr_0811 0.17 -1.5
916,175 - Psyr_0811 0.22 -1.5
916,281 + Psyr_0811 0.32 +0.2
916,282 - Psyr_0811 0.32 +0.6
916,361 + Psyr_0811 0.40 -1.5
916,361 + Psyr_0811 0.40 -1.7
916,362 - Psyr_0811 0.40 -0.7
916,364 + Psyr_0811 0.40 -1.2
916,364 + Psyr_0811 0.40 -3.4
916,364 + Psyr_0811 0.40 -1.0
916,364 + Psyr_0811 0.40 -0.8
916,364 + Psyr_0811 0.40 -0.4
916,365 - Psyr_0811 0.40 -2.4
916,365 - Psyr_0811 0.40 -1.0
916,438 + Psyr_0811 0.47 -1.4
916,456 + Psyr_0811 0.49 -1.4
916,457 - Psyr_0811 0.49 -1.2
916,748 - Psyr_0811 0.77 -0.7

Or see this region's nucleotide sequence