Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0171 and Psyr_0172 are separated by 16 nucleotides Psyr_0172 and Psyr_0173 overlap by 4 nucleotides Psyr_0173 and Psyr_0174 are separated by 456 nucleotides
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870
_0172
Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772
_0173
Psyr_0174: Psyr_0174 - Sodium:dicarboxylate symporter, at 188,229 to 189,560
_0174
Position (kb) 186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 186.257 kb on + strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.292 kb on + strand, within Psyr_0171 at 186.310 kb on - strand at 186.310 kb on - strand at 186.382 kb on + strand at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.705 kb on + strand, within Psyr_0172 at 186.705 kb on + strand, within Psyr_0172 at 186.706 kb on - strand, within Psyr_0172 at 186.812 kb on + strand, within Psyr_0172 at 186.812 kb on + strand, within Psyr_0172 at 186.813 kb on - strand, within Psyr_0172 at 186.813 kb on - strand, within Psyr_0172 at 186.813 kb on - strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.850 kb on - strand at 186.850 kb on - strand at 186.850 kb on - strand at 186.903 kb on + strand at 186.903 kb on + strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 187.080 kb on + strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.957 kb on + strand at 187.979 kb on - strand at 187.979 kb on - strand at 187.979 kb on - strand at 187.979 kb on - strand at 187.999 kb on + strand at 188.005 kb on + strand at 188.033 kb on + strand at 188.041 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.066 kb on + strand at 188.067 kb on - strand at 188.067 kb on - strand at 188.089 kb on + strand at 188.089 kb on + strand at 188.222 kb on + strand at 188.223 kb on - strand at 188.223 kb on - strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.228 kb on + strand at 188.229 kb on - strand at 188.229 kb on - strand at 188.488 kb on - strand, within Psyr_0174 at 188.601 kb on + strand, within Psyr_0174 at 188.601 kb on + strand, within Psyr_0174 at 188.602 kb on - strand, within Psyr_0174
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 186,257 + Psyr_0171 0.85 -1.0 186,257 + Psyr_0171 0.85 +0.7 186,257 + Psyr_0171 0.85 +0.2 186,258 - Psyr_0171 0.85 +1.0 186,292 + Psyr_0171 0.89 +0.6 186,310 - +0.1 186,310 - +0.3 186,382 + -0.4 186,670 + Psyr_0172 0.58 +1.0 186,670 + Psyr_0172 0.58 -3.2 186,671 - Psyr_0172 0.58 +0.2 186,671 - Psyr_0172 0.58 +0.3 186,705 + Psyr_0172 0.65 -0.0 186,705 + Psyr_0172 0.65 -0.9 186,706 - Psyr_0172 0.65 -0.1 186,812 + Psyr_0172 0.88 -1.5 186,812 + Psyr_0172 0.88 -0.5 186,813 - Psyr_0172 0.88 +0.3 186,813 - Psyr_0172 0.88 -0.1 186,813 - Psyr_0172 0.88 +0.5 186,817 + Psyr_0172 0.89 +0.2 186,817 + Psyr_0172 0.89 -0.7 186,817 + Psyr_0172 0.89 -1.0 186,817 + Psyr_0172 0.89 +1.2 186,817 + Psyr_0172 0.89 -1.2 186,817 + Psyr_0172 0.89 -0.9 186,817 + Psyr_0172 0.89 +1.8 186,817 + Psyr_0172 0.89 +0.1 186,817 + Psyr_0172 0.89 +0.7 186,817 + Psyr_0172 0.89 -1.7 186,817 + Psyr_0172 0.89 +1.1 186,818 - Psyr_0172 0.89 -1.0 186,818 - Psyr_0172 0.89 -1.1 186,818 - Psyr_0172 0.89 -0.4 186,818 - Psyr_0172 0.89 +1.1 186,818 - Psyr_0172 0.89 -1.4 186,818 - Psyr_0172 0.89 -0.8 186,818 - Psyr_0172 0.89 +1.1 186,818 - Psyr_0172 0.89 -1.2 186,818 - Psyr_0172 0.89 +1.7 186,821 + Psyr_0172 0.90 -1.7 186,821 + Psyr_0172 0.90 +0.5 186,821 + Psyr_0172 0.90 -0.0 186,821 + Psyr_0172 0.90 +0.7 186,821 + Psyr_0172 0.90 +1.1 186,821 + Psyr_0172 0.90 +0.4 186,822 - Psyr_0172 0.90 +0.2 186,822 - Psyr_0172 0.90 +0.3 186,822 - Psyr_0172 0.90 +0.3 186,822 - Psyr_0172 0.90 -0.9 186,822 - Psyr_0172 0.90 -0.5 186,822 - Psyr_0172 0.90 -0.0 186,822 - Psyr_0172 0.90 -1.8 186,822 - Psyr_0172 0.90 +1.9 186,822 - Psyr_0172 0.90 -0.9 186,822 - Psyr_0172 0.90 -1.0 186,849 + -1.0 186,849 + +0.1 186,849 + +0.9 186,849 + +0.5 186,850 - +1.1 186,850 - -0.9 186,850 - -0.2 186,903 + +2.3 186,903 + -0.2 186,904 - +0.3 186,904 - -1.5 186,904 - -1.4 186,904 - -0.3 186,978 + Psyr_0173 0.12 +0.8 186,978 + Psyr_0173 0.12 +0.5 186,978 + Psyr_0173 0.12 -0.5 186,978 + Psyr_0173 0.12 -1.0 186,978 + Psyr_0173 0.12 -1.4 186,978 + Psyr_0173 0.12 +0.9 186,979 - Psyr_0173 0.12 +0.0 186,979 - Psyr_0173 0.12 +1.1 186,979 - Psyr_0173 0.12 +0.2 186,979 - Psyr_0173 0.12 -1.0 186,979 - Psyr_0173 0.12 -0.3 186,980 + Psyr_0173 0.12 +1.8 186,980 + Psyr_0173 0.12 +2.1 186,980 + Psyr_0173 0.12 -0.1 186,980 + Psyr_0173 0.12 +0.5 186,980 + Psyr_0173 0.12 -0.1 186,980 + Psyr_0173 0.12 -2.1 186,981 - Psyr_0173 0.13 -0.4 186,981 - Psyr_0173 0.13 -0.2 186,981 - Psyr_0173 0.13 +1.9 186,981 - Psyr_0173 0.13 +0.8 186,981 - Psyr_0173 0.13 +0.0 187,080 + Psyr_0173 0.24 -0.7 187,081 - Psyr_0173 0.24 +0.1 187,081 - Psyr_0173 0.24 +0.6 187,401 + Psyr_0173 0.59 +1.8 187,401 + Psyr_0173 0.59 -0.1 187,401 + Psyr_0173 0.59 +0.9 187,401 + Psyr_0173 0.59 -0.2 187,402 - Psyr_0173 0.59 +0.0 187,402 - Psyr_0173 0.59 +1.2 187,402 - Psyr_0173 0.59 -0.1 187,402 - Psyr_0173 0.59 -0.2 187,402 - Psyr_0173 0.59 -0.2 187,402 - Psyr_0173 0.59 +1.5 187,402 - Psyr_0173 0.59 +0.2 187,402 - Psyr_0173 0.59 +0.3 187,402 - Psyr_0173 0.59 -1.1 187,847 + -1.0 187,847 + -0.3 187,847 + -0.0 187,847 + +0.4 187,847 + +0.6 187,847 + -0.9 187,847 + -0.3 187,847 + +1.2 187,847 + -0.5 187,847 + -1.9 187,847 + -1.7 187,848 - -0.9 187,848 - -0.4 187,848 - +3.2 187,848 - +0.5 187,848 - -0.9 187,848 - -0.5 187,848 - +0.5 187,848 - -0.3 187,848 - -0.0 187,848 - +1.6 187,848 - +0.7 187,935 + -1.1 187,935 + -3.9 187,935 + +1.6 187,935 + -1.2 187,935 + -0.5 187,935 + -1.4 187,936 - +0.7 187,936 - +0.0 187,936 - +1.6 187,936 - -0.7 187,936 - -0.8 187,957 + +0.4 187,979 - -1.5 187,979 - -1.4 187,979 - -0.9 187,979 - +0.7 187,999 + +0.6 188,005 + +1.1 188,033 + -1.7 188,041 + -0.7 188,047 + -0.1 188,047 + -3.5 188,047 + -0.9 188,047 + +0.4 188,047 + -0.2 188,047 + -0.3 188,048 - -2.0 188,048 - +1.4 188,048 - +1.0 188,066 + -0.4 188,067 - -0.0 188,067 - -0.0 188,089 + -2.0 188,089 + -0.3 188,222 + +2.1 188,223 - -1.7 188,223 - +1.6 188,225 + -1.4 188,225 + +0.6 188,225 + +0.9 188,225 + +1.2 188,225 + -0.6 188,225 + +1.1 188,226 - -1.7 188,226 - +1.9 188,228 + +0.5 188,229 - +0.6 188,229 - +0.5 188,488 - Psyr_0174 0.19 +0.8 188,601 + Psyr_0174 0.28 -0.3 188,601 + Psyr_0174 0.28 +0.7 188,602 - Psyr_0174 0.28 +0.7
Or see this region's nucleotide sequence