Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2627

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2626 and Echvi_2627 are separated by 837 nucleotidesEchvi_2627 and Echvi_2628 overlap by 8 nucleotides Echvi_2626: Echvi_2626 - Predicted membrane protein, at 3,113,233 to 3,114,027 _2626 Echvi_2627: Echvi_2627 - hypothetical protein, at 3,114,865 to 3,115,101 _2627 Echvi_2628: Echvi_2628 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 3,115,094 to 3,116,557 _2628 Position (kb) 3114 3115 3116Strain fitness (log2 ratio) -2 -1 0 1at 3113.873 kb on - strand, within Echvi_2626at 3113.875 kb on - strand, within Echvi_2626at 3113.875 kb on - strand, within Echvi_2626at 3113.914 kb on + strand, within Echvi_2626at 3113.929 kb on + strand, within Echvi_2626at 3113.930 kb on - strand, within Echvi_2626at 3113.930 kb on - strand, within Echvi_2626at 3113.932 kb on + strand, within Echvi_2626at 3113.977 kb on + strandat 3113.983 kb on + strandat 3113.985 kb on + strandat 3113.985 kb on + strandat 3113.986 kb on - strandat 3113.986 kb on - strandat 3113.986 kb on - strandat 3113.987 kb on + strandat 3113.987 kb on + strandat 3113.987 kb on + strandat 3113.987 kb on + strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3113.988 kb on - strandat 3114.001 kb on - strandat 3114.031 kb on + strandat 3114.032 kb on - strandat 3114.032 kb on - strandat 3114.059 kb on + strandat 3114.079 kb on + strandat 3114.080 kb on - strandat 3114.084 kb on + strandat 3114.085 kb on - strandat 3114.157 kb on + strandat 3114.157 kb on + strandat 3114.214 kb on + strandat 3114.229 kb on + strandat 3114.229 kb on + strandat 3114.276 kb on - strandat 3114.351 kb on - strandat 3114.351 kb on - strandat 3114.355 kb on - strandat 3114.355 kb on - strandat 3114.413 kb on + strandat 3114.413 kb on + strandat 3114.448 kb on - strandat 3114.453 kb on - strandat 3114.539 kb on - strandat 3114.595 kb on + strandat 3114.595 kb on + strandat 3114.595 kb on + strandat 3114.595 kb on + strandat 3114.596 kb on - strandat 3114.596 kb on - strandat 3114.596 kb on - strandat 3114.603 kb on - strandat 3114.603 kb on - strandat 3114.709 kb on + strandat 3114.798 kb on + strandat 3114.798 kb on + strandat 3114.799 kb on - strandat 3114.820 kb on + strandat 3114.820 kb on + strandat 3114.820 kb on + strandat 3114.821 kb on - strandat 3114.826 kb on + strandat 3114.846 kb on - strandat 3114.856 kb on - strandat 3114.856 kb on - strandat 3114.944 kb on + strand, within Echvi_2627at 3114.944 kb on + strand, within Echvi_2627at 3114.944 kb on + strand, within Echvi_2627at 3114.945 kb on - strand, within Echvi_2627at 3114.945 kb on - strand, within Echvi_2627at 3114.945 kb on - strand, within Echvi_2627at 3114.945 kb on - strand, within Echvi_2627at 3115.010 kb on + strand, within Echvi_2627at 3115.010 kb on + strand, within Echvi_2627at 3115.011 kb on - strand, within Echvi_2627at 3115.011 kb on - strand, within Echvi_2627at 3115.096 kb on - strandat 3115.222 kb on + strandat 3115.223 kb on - strandat 3115.223 kb on - strandat 3115.226 kb on + strandat 3115.227 kb on - strandat 3115.307 kb on + strand, within Echvi_2628at 3115.308 kb on - strand, within Echvi_2628at 3115.404 kb on - strand, within Echvi_2628at 3115.404 kb on - strand, within Echvi_2628at 3115.448 kb on - strand, within Echvi_2628at 3115.455 kb on - strand, within Echvi_2628at 3115.772 kb on + strand, within Echvi_2628at 3115.773 kb on - strand, within Echvi_2628at 3115.804 kb on + strand, within Echvi_2628at 3115.804 kb on + strand, within Echvi_2628at 3115.804 kb on + strand, within Echvi_2628at 3115.804 kb on + strand, within Echvi_2628at 3115.804 kb on + strand, within Echvi_2628at 3115.805 kb on - strand, within Echvi_2628at 3115.805 kb on - strand, within Echvi_2628at 3115.805 kb on - strand, within Echvi_2628at 3115.806 kb on + strand, within Echvi_2628at 3115.806 kb on + strand, within Echvi_2628at 3115.807 kb on - strand, within Echvi_2628at 3115.807 kb on - strand, within Echvi_2628at 3115.849 kb on + strand, within Echvi_2628at 3115.850 kb on - strand, within Echvi_2628at 3115.850 kb on - strand, within Echvi_2628at 3115.850 kb on - strand, within Echvi_2628at 3115.851 kb on + strand, within Echvi_2628at 3115.887 kb on + strand, within Echvi_2628at 3116.021 kb on + strand, within Echvi_2628at 3116.050 kb on + strand, within Echvi_2628at 3116.050 kb on + strand, within Echvi_2628at 3116.058 kb on + strand, within Echvi_2628at 3116.074 kb on + strand, within Echvi_2628at 3116.075 kb on - strand, within Echvi_2628at 3116.075 kb on - strand, within Echvi_2628

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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3,113,873 - Echvi_2626 0.81 +0.3
3,113,875 - Echvi_2626 0.81 -0.0
3,113,875 - Echvi_2626 0.81 -0.1
3,113,914 + Echvi_2626 0.86 -1.4
3,113,929 + Echvi_2626 0.88 -2.7
3,113,930 - Echvi_2626 0.88 +0.7
3,113,930 - Echvi_2626 0.88 +0.9
3,113,932 + Echvi_2626 0.88 +0.0
3,113,977 + -0.2
3,113,983 + -0.3
3,113,985 + +0.2
3,113,985 + -0.9
3,113,986 - -0.3
3,113,986 - -0.6
3,113,986 - +0.3
3,113,987 + -0.0
3,113,987 + +0.4
3,113,987 + +0.5
3,113,987 + +0.2
3,113,988 - -0.1
3,113,988 - +0.1
3,113,988 - +0.8
3,113,988 - -0.2
3,113,988 - -0.5
3,113,988 - -0.1
3,113,988 - -0.5
3,113,988 - -0.2
3,113,988 - -0.3
3,114,001 - -1.2
3,114,031 + -0.7
3,114,032 - -0.1
3,114,032 - -0.5
3,114,059 + -0.3
3,114,079 + +0.1
3,114,080 - +0.5
3,114,084 + +0.1
3,114,085 - -0.3
3,114,157 + +0.7
3,114,157 + -0.9
3,114,214 + -0.7
3,114,229 + +0.0
3,114,229 + +0.4
3,114,276 - +0.8
3,114,351 - -0.5
3,114,351 - -0.0
3,114,355 - +0.9
3,114,355 - +0.5
3,114,413 + -0.6
3,114,413 + -1.0
3,114,448 - -0.7
3,114,453 - +0.3
3,114,539 - -0.3
3,114,595 + +0.4
3,114,595 + -1.3
3,114,595 + -0.2
3,114,595 + +0.3
3,114,596 - +0.0
3,114,596 - -0.6
3,114,596 - +1.3
3,114,603 - +0.1
3,114,603 - +0.9
3,114,709 + -0.1
3,114,798 + +0.4
3,114,798 + +0.2
3,114,799 - -1.5
3,114,820 + +1.4
3,114,820 + -0.5
3,114,820 + -0.2
3,114,821 - +0.1
3,114,826 + +1.2
3,114,846 - -0.1
3,114,856 - +1.1
3,114,856 - -0.3
3,114,944 + Echvi_2627 0.33 +1.1
3,114,944 + Echvi_2627 0.33 -0.4
3,114,944 + Echvi_2627 0.33 -0.0
3,114,945 - Echvi_2627 0.34 -1.6
3,114,945 - Echvi_2627 0.34 -2.1
3,114,945 - Echvi_2627 0.34 -0.5
3,114,945 - Echvi_2627 0.34 -1.0
3,115,010 + Echvi_2627 0.61 +1.7
3,115,010 + Echvi_2627 0.61 +0.1
3,115,011 - Echvi_2627 0.62 -0.3
3,115,011 - Echvi_2627 0.62 -1.3
3,115,096 - -0.1
3,115,222 + +0.3
3,115,223 - +0.6
3,115,223 - -0.8
3,115,226 + +0.7
3,115,227 - +0.7
3,115,307 + Echvi_2628 0.15 -0.5
3,115,308 - Echvi_2628 0.15 -0.8
3,115,404 - Echvi_2628 0.21 +0.4
3,115,404 - Echvi_2628 0.21 -0.1
3,115,448 - Echvi_2628 0.24 +0.1
3,115,455 - Echvi_2628 0.25 -0.0
3,115,772 + Echvi_2628 0.46 -0.0
3,115,773 - Echvi_2628 0.46 -0.2
3,115,804 + Echvi_2628 0.48 -0.5
3,115,804 + Echvi_2628 0.48 -0.0
3,115,804 + Echvi_2628 0.48 +0.1
3,115,804 + Echvi_2628 0.48 -0.7
3,115,804 + Echvi_2628 0.48 +0.1
3,115,805 - Echvi_2628 0.49 +0.2
3,115,805 - Echvi_2628 0.49 +0.7
3,115,805 - Echvi_2628 0.49 -0.9
3,115,806 + Echvi_2628 0.49 +0.0
3,115,806 + Echvi_2628 0.49 -0.6
3,115,807 - Echvi_2628 0.49 +0.4
3,115,807 - Echvi_2628 0.49 +0.1
3,115,849 + Echvi_2628 0.52 +0.1
3,115,850 - Echvi_2628 0.52 +1.4
3,115,850 - Echvi_2628 0.52 -1.7
3,115,850 - Echvi_2628 0.52 -0.1
3,115,851 + Echvi_2628 0.52 +0.6
3,115,887 + Echvi_2628 0.54 +0.1
3,116,021 + Echvi_2628 0.63 -0.0
3,116,050 + Echvi_2628 0.65 -0.2
3,116,050 + Echvi_2628 0.65 -2.0
3,116,058 + Echvi_2628 0.66 -0.4
3,116,074 + Echvi_2628 0.67 -0.4
3,116,075 - Echvi_2628 0.67 -1.3
3,116,075 - Echvi_2628 0.67 -0.1

Or see this region's nucleotide sequence