Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0039

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0038 and Echvi_0039 are separated by 12 nucleotidesEchvi_0039 and Echvi_0040 are separated by 80 nucleotidesEchvi_0040 and Echvi_0041 overlap by 56 nucleotidesEchvi_0041 and Echvi_0042 are separated by 123 nucleotides Echvi_0038: Echvi_0038 - Putative regulator of cell autolysis, at 35,975 to 37,018 _0038 Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831 _0039 Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079 _0040 Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701 _0041 Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874 _0042 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.136 kb on - strand, within Echvi_0038at 36.162 kb on + strand, within Echvi_0038at 36.209 kb on - strand, within Echvi_0038at 36.260 kb on + strand, within Echvi_0038at 36.332 kb on + strand, within Echvi_0038at 36.349 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.386 kb on + strand, within Echvi_0038at 36.498 kb on - strand, within Echvi_0038at 36.502 kb on + strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.505 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.642 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.944 kb on + strandat 36.944 kb on + strandat 36.945 kb on - strandat 37.116 kb on + strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.147 kb on + strand, within Echvi_0039at 37.148 kb on - strand, within Echvi_0039at 37.257 kb on - strand, within Echvi_0039at 37.381 kb on + strand, within Echvi_0039at 37.566 kb on + strand, within Echvi_0039at 37.588 kb on + strand, within Echvi_0039at 37.589 kb on - strand, within Echvi_0039at 37.589 kb on - strand, within Echvi_0039at 37.678 kb on + strand, within Echvi_0039at 37.715 kb on + strand, within Echvi_0039at 37.775 kb on + strandat 37.776 kb on - strandat 37.776 kb on - strandat 37.778 kb on + strandat 37.779 kb on - strandat 37.779 kb on - strandat 37.840 kb on + strandat 37.892 kb on + strandat 37.895 kb on - strandat 38.702 kb on - strandat 38.741 kb on + strandat 38.764 kb on + strandat 38.765 kb on - strandat 38.784 kb on + strandat 38.785 kb on - strandat 38.785 kb on - strandat 38.785 kb on - strandat 38.785 kb on - strandat 38.785 kb on - strandat 38.786 kb on + strandat 38.786 kb on + strandat 38.786 kb on + strandat 38.787 kb on - strandat 38.787 kb on - strandat 38.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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36,070 - -1.2
36,070 - -1.7
36,070 - -0.2
36,070 - -1.1
36,136 - Echvi_0038 0.15 -1.7
36,162 + Echvi_0038 0.18 +1.1
36,209 - Echvi_0038 0.22 -0.2
36,260 + Echvi_0038 0.27 +0.3
36,332 + Echvi_0038 0.34 -0.0
36,349 + Echvi_0038 0.36 -1.1
36,368 + Echvi_0038 0.38 +0.5
36,368 + Echvi_0038 0.38 +0.7
36,386 + Echvi_0038 0.39 -0.7
36,498 - Echvi_0038 0.50 -0.6
36,502 + Echvi_0038 0.50 +0.4
36,503 - Echvi_0038 0.51 -1.3
36,503 - Echvi_0038 0.51 +0.4
36,505 + Echvi_0038 0.51 -0.3
36,640 + Echvi_0038 0.64 -1.1
36,640 + Echvi_0038 0.64 +0.4
36,642 + Echvi_0038 0.64 +0.3
36,879 + Echvi_0038 0.87 -0.1
36,879 + Echvi_0038 0.87 +0.6
36,879 + Echvi_0038 0.87 -1.0
36,879 + Echvi_0038 0.87 +0.8
36,880 - Echvi_0038 0.87 -0.5
36,880 - Echvi_0038 0.87 -1.0
36,880 - Echvi_0038 0.87 -0.9
36,880 - Echvi_0038 0.87 -0.6
36,944 + -0.3
36,944 + -0.2
36,945 - -0.3
37,116 + Echvi_0039 0.11 -0.9
37,117 - Echvi_0039 0.11 -1.3
37,117 - Echvi_0039 0.11 -0.7
37,117 - Echvi_0039 0.11 -1.1
37,147 + Echvi_0039 0.14 +0.7
37,148 - Echvi_0039 0.15 -1.2
37,257 - Echvi_0039 0.28 -1.4
37,381 + Echvi_0039 0.44 -0.1
37,566 + Echvi_0039 0.67 +0.0
37,588 + Echvi_0039 0.70 +0.5
37,589 - Echvi_0039 0.70 -0.0
37,589 - Echvi_0039 0.70 -0.3
37,678 + Echvi_0039 0.81 -1.0
37,715 + Echvi_0039 0.85 -1.1
37,775 + +0.5
37,776 - -0.5
37,776 - -0.7
37,778 + +0.2
37,779 - -1.4
37,779 - +0.3
37,840 + -0.0
37,892 + -0.1
37,895 - -0.6
38,702 - -0.0
38,741 + -0.1
38,764 + +0.8
38,765 - -0.2
38,784 + +0.5
38,785 - -1.1
38,785 - -0.7
38,785 - -1.1
38,785 - -0.0
38,785 - -0.8
38,786 + -0.2
38,786 + -1.8
38,786 + +1.3
38,787 - +0.1
38,787 - +2.9
38,789 - +0.2

Or see this region's nucleotide sequence