Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0613

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0611 and Psyr_0612 are separated by 66 nucleotidesPsyr_0612 and Psyr_0613 are separated by 1 nucleotidesPsyr_0613 and Psyr_0614 are separated by 7 nucleotidesPsyr_0614 and Psyr_0615 are separated by 5 nucleotides Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011 _0611 Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Psyr_0614: Psyr_0614 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 703,463 to 704,101 _0614 Psyr_0615: Psyr_0615 - conserved hypothetical protein, at 704,107 to 704,829 _0615 Position (kb) 702 703 704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 701.936 kb on - strand, within Psyr_0611at 701.936 kb on - strand, within Psyr_0611at 701.946 kb on - strandat 702.007 kb on - strandat 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.173 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.436 kb on - strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strandat 703.119 kb on + strand, within Psyr_0613at 703.120 kb on - strand, within Psyr_0613at 703.165 kb on + strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.416 kb on + strandat 703.523 kb on + strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.772 kb on + strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.847 kb on + strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.909 kb on + strand, within Psyr_0614at 703.910 kb on - strand, within Psyr_0614at 703.910 kb on - strand, within Psyr_0614at 704.037 kb on + strand, within Psyr_0614at 704.037 kb on + strand, within Psyr_0614at 704.112 kb on + strandat 704.113 kb on - strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.174 kb on - strandat 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.217 kb on - strand, within Psyr_0615at 704.232 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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701,936 - Psyr_0611 0.89 +0.0
701,936 - Psyr_0611 0.89 +0.2
701,946 - -1.9
702,007 - +1.5
702,163 + Psyr_0612 0.11 -0.2
702,163 + Psyr_0612 0.11 +2.7
702,164 - Psyr_0612 0.11 +0.3
702,164 - Psyr_0612 0.11 +1.3
702,164 - Psyr_0612 0.11 -0.5
702,164 - Psyr_0612 0.11 +1.2
702,173 - Psyr_0612 0.12 +0.3
702,234 - Psyr_0612 0.20 +0.7
702,234 - Psyr_0612 0.20 -0.3
702,351 + Psyr_0612 0.36 +0.2
702,351 + Psyr_0612 0.36 +0.7
702,351 + Psyr_0612 0.36 +0.7
702,351 + Psyr_0612 0.36 -1.6
702,352 - Psyr_0612 0.36 +1.1
702,352 - Psyr_0612 0.36 -1.0
702,352 - Psyr_0612 0.36 +1.2
702,352 - Psyr_0612 0.36 +1.2
702,352 - Psyr_0612 0.36 +0.1
702,411 + Psyr_0612 0.44 -0.4
702,411 + Psyr_0612 0.44 +0.7
702,411 + Psyr_0612 0.44 +0.2
702,425 + Psyr_0612 0.46 +0.1
702,426 - Psyr_0612 0.46 +2.2
702,427 + Psyr_0612 0.46 -0.3
702,427 + Psyr_0612 0.46 +0.6
702,427 + Psyr_0612 0.46 -1.4
702,427 + Psyr_0612 0.46 -1.1
702,427 + Psyr_0612 0.46 +1.2
702,427 + Psyr_0612 0.46 -1.4
702,427 + Psyr_0612 0.46 +0.8
702,427 + Psyr_0612 0.46 +0.6
702,427 + Psyr_0612 0.46 +0.8
702,428 - Psyr_0612 0.46 -0.0
702,428 - Psyr_0612 0.46 -1.9
702,428 - Psyr_0612 0.46 +0.4
702,428 - Psyr_0612 0.46 -1.5
702,436 - Psyr_0612 0.47 -1.8
702,563 + Psyr_0612 0.64 +0.4
702,591 + Psyr_0612 0.67 +0.4
702,591 + Psyr_0612 0.67 -0.4
702,591 + Psyr_0612 0.67 +0.8
702,591 + Psyr_0612 0.67 +1.1
702,592 - Psyr_0612 0.67 -2.1
702,592 - Psyr_0612 0.67 +0.2
702,592 - Psyr_0612 0.67 +1.0
702,592 - Psyr_0612 0.67 -1.9
702,592 - Psyr_0612 0.67 -1.4
702,592 - Psyr_0612 0.67 +0.5
702,592 - Psyr_0612 0.67 -3.2
702,592 - Psyr_0612 0.67 +0.2
702,592 - Psyr_0612 0.67 -2.4
702,592 - Psyr_0612 0.67 +0.5
702,593 + Psyr_0612 0.68 +0.4
702,593 + Psyr_0612 0.68 +0.1
702,594 - Psyr_0612 0.68 +1.0
702,594 - Psyr_0612 0.68 +1.4
702,672 + Psyr_0612 0.78 -0.1
702,672 + Psyr_0612 0.78 +1.7
702,673 - Psyr_0612 0.78 +0.3
702,673 - Psyr_0612 0.78 -1.1
702,673 - Psyr_0612 0.78 +0.4
702,726 + Psyr_0612 0.85 +1.1
702,726 + Psyr_0612 0.85 +0.2
702,756 + Psyr_0612 0.89 +0.1
702,756 + Psyr_0612 0.89 -0.5
702,756 + Psyr_0612 0.89 +0.8
702,756 + Psyr_0612 0.89 -1.6
702,756 + Psyr_0612 0.89 -0.2
702,756 + Psyr_0612 0.89 -1.1
702,756 + Psyr_0612 0.89 -1.1
702,757 - Psyr_0612 0.89 +1.2
702,757 - Psyr_0612 0.89 +0.5
702,757 - Psyr_0612 0.89 +1.0
702,757 - Psyr_0612 0.89 +0.5
702,757 - Psyr_0612 0.89 +0.4
702,757 - Psyr_0612 0.89 -0.9
702,888 + +0.3
703,119 + Psyr_0613 0.45 +0.6
703,120 - Psyr_0613 0.45 -0.7
703,165 + Psyr_0613 0.53 -0.3
703,166 - Psyr_0613 0.53 -2.6
703,166 - Psyr_0613 0.53 +0.1
703,189 + Psyr_0613 0.57 +1.3
703,189 + Psyr_0613 0.57 -0.5
703,190 - Psyr_0613 0.57 +0.4
703,190 - Psyr_0613 0.57 -1.2
703,190 - Psyr_0613 0.57 +1.3
703,190 - Psyr_0613 0.57 +0.6
703,190 - Psyr_0613 0.57 -1.1
703,190 - Psyr_0613 0.57 -0.3
703,190 - Psyr_0613 0.57 +0.1
703,190 - Psyr_0613 0.57 +0.1
703,190 - Psyr_0613 0.57 -1.6
703,416 + -0.0
703,523 + -0.1
703,524 - -1.4
703,524 - +0.4
703,524 - -2.2
703,691 + Psyr_0614 0.36 -0.2
703,691 + Psyr_0614 0.36 +0.7
703,691 + Psyr_0614 0.36 +0.5
703,691 + Psyr_0614 0.36 -0.1
703,692 - Psyr_0614 0.36 -1.2
703,692 - Psyr_0614 0.36 +1.9
703,692 - Psyr_0614 0.36 +0.4
703,709 + Psyr_0614 0.38 -0.9
703,709 + Psyr_0614 0.38 -1.0
703,772 + Psyr_0614 0.48 +0.1
703,773 - Psyr_0614 0.49 -1.8
703,773 - Psyr_0614 0.49 +0.4
703,773 - Psyr_0614 0.49 -0.8
703,847 + Psyr_0614 0.60 +0.3
703,848 - Psyr_0614 0.60 +1.6
703,848 - Psyr_0614 0.60 -1.8
703,907 + Psyr_0614 0.69 -0.9
703,907 + Psyr_0614 0.69 -1.4
703,907 + Psyr_0614 0.69 +0.4
703,907 + Psyr_0614 0.69 -0.5
703,907 + Psyr_0614 0.69 -0.8
703,907 + Psyr_0614 0.69 +0.9
703,907 + Psyr_0614 0.69 +1.2
703,907 + Psyr_0614 0.69 +0.2
703,907 + Psyr_0614 0.69 +0.6
703,907 + Psyr_0614 0.69 +2.2
703,907 + Psyr_0614 0.69 +1.9
703,907 + Psyr_0614 0.69 -0.1
703,907 + Psyr_0614 0.69 +0.3
703,907 + Psyr_0614 0.69 +0.4
703,907 + Psyr_0614 0.69 +0.6
703,908 - Psyr_0614 0.70 +0.9
703,908 - Psyr_0614 0.70 +1.4
703,908 - Psyr_0614 0.70 +1.0
703,908 - Psyr_0614 0.70 +0.3
703,908 - Psyr_0614 0.70 +0.0
703,908 - Psyr_0614 0.70 +1.0
703,908 - Psyr_0614 0.70 +0.6
703,908 - Psyr_0614 0.70 +1.7
703,908 - Psyr_0614 0.70 -0.4
703,908 - Psyr_0614 0.70 +0.1
703,908 - Psyr_0614 0.70 +0.1
703,908 - Psyr_0614 0.70 -0.6
703,908 - Psyr_0614 0.70 +1.2
703,908 - Psyr_0614 0.70 -0.2
703,908 - Psyr_0614 0.70 -1.1
703,908 - Psyr_0614 0.70 +0.2
703,908 - Psyr_0614 0.70 -1.4
703,908 - Psyr_0614 0.70 +0.6
703,908 - Psyr_0614 0.70 -1.4
703,908 - Psyr_0614 0.70 -1.6
703,909 + Psyr_0614 0.70 +0.9
703,910 - Psyr_0614 0.70 -0.5
703,910 - Psyr_0614 0.70 +1.8
704,037 + Psyr_0614 0.90 -1.8
704,037 + Psyr_0614 0.90 -0.4
704,112 + +3.9
704,113 - -0.9
704,173 + +1.0
704,173 + -0.6
704,173 + -1.1
704,173 + +1.9
704,173 + +0.5
704,174 - +0.7
704,185 + Psyr_0615 0.11 -0.0
704,185 + Psyr_0615 0.11 +0.6
704,185 + Psyr_0615 0.11 -0.5
704,186 - Psyr_0615 0.11 +1.2
704,186 - Psyr_0615 0.11 -0.0
704,208 + Psyr_0615 0.14 -0.0
704,208 + Psyr_0615 0.14 -2.5
704,208 + Psyr_0615 0.14 -1.8
704,209 - Psyr_0615 0.14 +1.2
704,209 - Psyr_0615 0.14 -3.2
704,209 - Psyr_0615 0.14 +0.8
704,209 - Psyr_0615 0.14 +0.4
704,209 - Psyr_0615 0.14 -0.6
704,209 - Psyr_0615 0.14 +0.9
704,216 + Psyr_0615 0.15 +0.7
704,216 + Psyr_0615 0.15 -2.5
704,216 + Psyr_0615 0.15 +1.4
704,217 - Psyr_0615 0.15 +1.3
704,232 - Psyr_0615 0.17 -0.6
704,334 - Psyr_0615 0.31 -0.5
704,334 - Psyr_0615 0.31 -0.6

Or see this region's nucleotide sequence