Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0206 and Psyr_0207 are separated by 52 nucleotides Psyr_0207 and Psyr_0208 are separated by 54 nucleotides Psyr_0208 and Psyr_0209 are separated by 24 nucleotides
Psyr_0206: Psyr_0206 - conserved hypothetical protein, at 220,906 to 221,754
_0206
Psyr_0207: Psyr_0207 - lipoprotein, putative, at 221,807 to 222,544
_0207
Psyr_0208: Psyr_0208 - endoribonuclease L-PSP, at 222,599 to 222,979
_0208
Psyr_0209: Psyr_0209 - RelA/SpoT protein, at 223,004 to 225,127
_0209
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 220.813 kb on + strand at 220.813 kb on + strand at 220.817 kb on - strand at 220.817 kb on - strand at 220.831 kb on - strand at 220.834 kb on + strand at 220.835 kb on - strand at 221.101 kb on + strand, within Psyr_0206 at 221.101 kb on + strand, within Psyr_0206 at 221.101 kb on + strand, within Psyr_0206 at 221.102 kb on - strand, within Psyr_0206 at 221.102 kb on - strand, within Psyr_0206 at 221.102 kb on - strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.110 kb on + strand, within Psyr_0206 at 221.111 kb on - strand, within Psyr_0206 at 221.111 kb on - strand, within Psyr_0206 at 221.111 kb on - strand, within Psyr_0206 at 221.158 kb on + strand, within Psyr_0206 at 221.158 kb on + strand, within Psyr_0206 at 221.158 kb on + strand, within Psyr_0206 at 221.159 kb on - strand, within Psyr_0206 at 221.159 kb on - strand, within Psyr_0206 at 221.159 kb on - strand, within Psyr_0206 at 221.159 kb on - strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.305 kb on + strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.306 kb on - strand, within Psyr_0206 at 221.386 kb on - strand, within Psyr_0206 at 221.390 kb on - strand, within Psyr_0206 at 221.472 kb on + strand, within Psyr_0206 at 221.473 kb on - strand, within Psyr_0206 at 221.473 kb on - strand, within Psyr_0206 at 221.473 kb on - strand, within Psyr_0206 at 221.611 kb on + strand, within Psyr_0206 at 221.612 kb on - strand, within Psyr_0206 at 221.676 kb on + strand at 221.713 kb on + strand at 221.752 kb on + strand at 221.809 kb on - strand at 221.891 kb on + strand, within Psyr_0207 at 221.892 kb on - strand, within Psyr_0207 at 221.892 kb on - strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.115 kb on - strand, within Psyr_0207 at 222.115 kb on - strand, within Psyr_0207 at 222.124 kb on - strand, within Psyr_0207 at 222.124 kb on - strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.343 kb on - strand, within Psyr_0207 at 222.600 kb on + strand at 222.696 kb on + strand, within Psyr_0208 at 222.696 kb on + strand, within Psyr_0208 at 222.696 kb on + strand, within Psyr_0208 at 222.696 kb on + strand, within Psyr_0208 at 222.696 kb on + strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 220,813 + -1.7 220,813 + +0.2 220,817 - -0.7 220,817 - +0.0 220,831 - -1.7 220,834 + -1.5 220,835 - +0.3 221,101 + Psyr_0206 0.23 -0.8 221,101 + Psyr_0206 0.23 -2.2 221,101 + Psyr_0206 0.23 +2.0 221,102 - Psyr_0206 0.23 +0.3 221,102 - Psyr_0206 0.23 +1.7 221,102 - Psyr_0206 0.23 -0.7 221,110 + Psyr_0206 0.24 +1.7 221,110 + Psyr_0206 0.24 +1.0 221,110 + Psyr_0206 0.24 +2.9 221,110 + Psyr_0206 0.24 +0.4 221,110 + Psyr_0206 0.24 -0.4 221,110 + Psyr_0206 0.24 -1.7 221,110 + Psyr_0206 0.24 +0.2 221,111 - Psyr_0206 0.24 -0.7 221,111 - Psyr_0206 0.24 +1.6 221,111 - Psyr_0206 0.24 +1.0 221,158 + Psyr_0206 0.30 +0.7 221,158 + Psyr_0206 0.30 +1.5 221,158 + Psyr_0206 0.30 +0.7 221,159 - Psyr_0206 0.30 -1.0 221,159 - Psyr_0206 0.30 +0.5 221,159 - Psyr_0206 0.30 +1.3 221,159 - Psyr_0206 0.30 +0.9 221,305 + Psyr_0206 0.47 -0.8 221,305 + Psyr_0206 0.47 +1.3 221,305 + Psyr_0206 0.47 -0.5 221,305 + Psyr_0206 0.47 +0.4 221,305 + Psyr_0206 0.47 +0.0 221,305 + Psyr_0206 0.47 +2.0 221,306 - Psyr_0206 0.47 -1.4 221,306 - Psyr_0206 0.47 +0.7 221,306 - Psyr_0206 0.47 -0.1 221,306 - Psyr_0206 0.47 +0.3 221,306 - Psyr_0206 0.47 -0.8 221,306 - Psyr_0206 0.47 -0.4 221,306 - Psyr_0206 0.47 -2.6 221,386 - Psyr_0206 0.57 +2.1 221,390 - Psyr_0206 0.57 +0.5 221,472 + Psyr_0206 0.67 -1.5 221,473 - Psyr_0206 0.67 -0.7 221,473 - Psyr_0206 0.67 -0.5 221,473 - Psyr_0206 0.67 +1.2 221,611 + Psyr_0206 0.83 -1.9 221,612 - Psyr_0206 0.83 -0.8 221,676 + +0.9 221,713 + +0.0 221,752 + -1.9 221,809 - -0.8 221,891 + Psyr_0207 0.11 -1.2 221,892 - Psyr_0207 0.12 -2.9 221,892 - Psyr_0207 0.12 +0.1 222,114 + Psyr_0207 0.42 -1.0 222,114 + Psyr_0207 0.42 -0.4 222,114 + Psyr_0207 0.42 +0.8 222,114 + Psyr_0207 0.42 +1.3 222,114 + Psyr_0207 0.42 -0.9 222,114 + Psyr_0207 0.42 -1.5 222,115 - Psyr_0207 0.42 -1.0 222,115 - Psyr_0207 0.42 +0.9 222,124 - Psyr_0207 0.43 -1.3 222,124 - Psyr_0207 0.43 -1.8 222,342 + Psyr_0207 0.72 +0.6 222,342 + Psyr_0207 0.72 +0.0 222,342 + Psyr_0207 0.72 +2.3 222,342 + Psyr_0207 0.72 +0.9 222,343 - Psyr_0207 0.73 -1.5 222,600 + -1.0 222,696 + Psyr_0208 0.25 +1.3 222,696 + Psyr_0208 0.25 +0.4 222,696 + Psyr_0208 0.25 -2.1 222,696 + Psyr_0208 0.25 +0.3 222,696 + Psyr_0208 0.25 -0.5 222,697 - Psyr_0208 0.26 -0.6 222,697 - Psyr_0208 0.26 -2.7 222,894 + Psyr_0208 0.77 +0.3 222,894 + Psyr_0208 0.77 +0.1 222,894 + Psyr_0208 0.77 +0.4 222,894 + Psyr_0208 0.77 +1.1 222,895 - Psyr_0208 0.78 -1.9 222,895 - Psyr_0208 0.78 +0.2 222,895 - Psyr_0208 0.78 -1.3 222,895 - Psyr_0208 0.78 -0.7 222,895 - Psyr_0208 0.78 -0.6 222,895 - Psyr_0208 0.78 -1.2 222,895 - Psyr_0208 0.78 -1.3 222,895 - Psyr_0208 0.78 -0.8 222,895 - Psyr_0208 0.78 -1.5 222,895 - Psyr_0208 0.78 -0.6
Or see this region's nucleotide sequence