Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0144 and Psyr_0145 are separated by 47 nucleotides Psyr_0145 and Psyr_0146 are separated by 63 nucleotides
Psyr_0144: Psyr_0144 - transcriptional regulator, AsnC family, at 157,030 to 157,518
_0144
Psyr_0145: Psyr_0145 - conserved hypothetical protein, at 157,566 to 158,240
_0145
Psyr_0146: Psyr_0146 - 4-aminobutyrate aminotransferase apoenzyme, at 158,304 to 159,608
_0146
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 156.617 kb on + strand at 156.618 kb on - strand at 156.624 kb on - strand at 156.624 kb on - strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.669 kb on + strand at 156.780 kb on - strand at 156.780 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.988 kb on + strand at 156.989 kb on - strand at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.190 kb on + strand, within Psyr_0144 at 157.190 kb on + strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.472 kb on - strand at 157.479 kb on + strand at 157.479 kb on + strand at 157.480 kb on - strand at 157.480 kb on - strand at 157.480 kb on - strand at 157.485 kb on + strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.520 kb on - strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.552 kb on - strand at 157.559 kb on - strand at 157.619 kb on + strand at 157.625 kb on + strand at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.894 kb on + strand, within Psyr_0145 at 157.895 kb on - strand, within Psyr_0145 at 158.056 kb on + strand, within Psyr_0145 at 158.213 kb on + strand at 158.213 kb on + strand at 158.213 kb on + strand at 158.566 kb on + strand, within Psyr_0146 at 158.566 kb on + strand, within Psyr_0146 at 158.567 kb on - strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.843 kb on + strand, within Psyr_0146 at 158.843 kb on + strand, within Psyr_0146 at 158.844 kb on - strand, within Psyr_0146 at 158.850 kb on - strand, within Psyr_0146 at 159.068 kb on - strand, within Psyr_0146 at 159.128 kb on - strand, within Psyr_0146 at 159.128 kb on - strand, within Psyr_0146 at 159.167 kb on + strand, within Psyr_0146
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 156,617 + +0.9 156,618 - +1.4 156,624 - +0.5 156,624 - +0.8 156,642 + +0.2 156,642 + -0.7 156,642 + -0.8 156,642 + -3.4 156,642 + +1.3 156,642 + -0.0 156,642 + +2.1 156,642 + +0.4 156,642 + -0.1 156,642 + -0.1 156,642 + -0.9 156,642 + +2.1 156,642 + +0.3 156,642 + +0.0 156,642 + +2.0 156,642 + +0.3 156,642 + -0.0 156,642 + -0.7 156,642 + +0.7 156,642 + -0.2 156,642 + -1.7 156,642 + -0.0 156,642 + +0.3 156,642 + -1.0 156,643 - -0.1 156,643 - -1.7 156,643 - +1.3 156,643 - +1.5 156,643 - -0.0 156,643 - +0.2 156,643 - +0.1 156,643 - +0.6 156,643 - +0.8 156,643 - +0.5 156,643 - +0.0 156,643 - -0.5 156,643 - -0.1 156,643 - +0.9 156,643 - +1.5 156,643 - -2.7 156,643 - +0.5 156,643 - +0.6 156,643 - +0.8 156,646 + -2.8 156,646 + +0.5 156,646 + +0.1 156,646 + -1.4 156,646 + +0.1 156,646 + -0.3 156,647 - +0.2 156,647 - +0.1 156,647 - -0.1 156,647 - +1.2 156,647 - +1.9 156,647 - -0.0 156,647 - +1.1 156,647 - -2.2 156,647 - -1.0 156,669 + -1.0 156,780 - +0.3 156,780 - -0.7 156,922 - +0.3 156,922 - +0.2 156,922 - +0.6 156,922 - +0.8 156,922 - +2.1 156,922 - +1.0 156,922 - +0.8 156,922 - +2.6 156,988 + +0.0 156,989 - -1.0 157,094 + Psyr_0144 0.13 -0.1 157,094 + Psyr_0144 0.13 -1.2 157,094 + Psyr_0144 0.13 +1.6 157,094 + Psyr_0144 0.13 +0.6 157,095 - Psyr_0144 0.13 -1.5 157,095 - Psyr_0144 0.13 -1.4 157,095 - Psyr_0144 0.13 -1.7 157,095 - Psyr_0144 0.13 -0.1 157,095 - Psyr_0144 0.13 -0.0 157,095 - Psyr_0144 0.13 +1.2 157,095 - Psyr_0144 0.13 +0.6 157,095 - Psyr_0144 0.13 +0.6 157,103 + Psyr_0144 0.15 -2.2 157,103 + Psyr_0144 0.15 -3.0 157,103 + Psyr_0144 0.15 +0.1 157,104 - Psyr_0144 0.15 -0.4 157,104 - Psyr_0144 0.15 -0.1 157,104 - Psyr_0144 0.15 -0.2 157,190 + Psyr_0144 0.33 -0.6 157,190 + Psyr_0144 0.33 +0.1 157,339 - Psyr_0144 0.63 +0.3 157,339 - Psyr_0144 0.63 +0.8 157,352 + Psyr_0144 0.66 +0.5 157,353 - Psyr_0144 0.66 -0.3 157,353 - Psyr_0144 0.66 +0.1 157,365 - Psyr_0144 0.69 -1.4 157,365 - Psyr_0144 0.69 +1.3 157,365 - Psyr_0144 0.69 -1.8 157,472 - +0.0 157,479 + -0.7 157,479 + -3.2 157,480 - -1.8 157,480 - -1.8 157,480 - -0.2 157,485 + -0.2 157,519 + +1.0 157,519 + +0.9 157,519 + +0.9 157,520 - +0.2 157,523 + -1.4 157,523 + -0.1 157,523 + +0.3 157,523 + -2.3 157,524 - +0.8 157,524 - -2.8 157,524 - -1.8 157,524 - +0.6 157,524 - +0.1 157,524 - +0.6 157,524 - -1.5 157,524 - -1.0 157,532 + +1.3 157,532 + +0.8 157,532 + -0.9 157,532 + -0.2 157,532 + +0.4 157,532 + +0.7 157,532 + +0.4 157,532 + -0.8 157,532 + +3.0 157,533 - +1.9 157,533 - -0.2 157,533 - +1.0 157,533 - -0.3 157,533 - +0.5 157,533 - +0.4 157,533 - -0.4 157,533 - +0.9 157,552 - -0.2 157,559 - +0.1 157,619 + +0.3 157,625 + -1.5 157,864 + Psyr_0145 0.44 -0.7 157,864 + Psyr_0145 0.44 -0.5 157,864 + Psyr_0145 0.44 -1.5 157,864 + Psyr_0145 0.44 -3.2 157,864 + Psyr_0145 0.44 -0.5 157,864 + Psyr_0145 0.44 +0.7 157,865 - Psyr_0145 0.44 -0.3 157,865 - Psyr_0145 0.44 -1.7 157,865 - Psyr_0145 0.44 -0.7 157,894 + Psyr_0145 0.49 +0.6 157,895 - Psyr_0145 0.49 +0.1 158,056 + Psyr_0145 0.73 +1.3 158,213 + -0.5 158,213 + +0.5 158,213 + -0.0 158,566 + Psyr_0146 0.20 -0.1 158,566 + Psyr_0146 0.20 -0.3 158,567 - Psyr_0146 0.20 +0.7 158,647 + Psyr_0146 0.26 -0.1 158,647 + Psyr_0146 0.26 +0.1 158,647 + Psyr_0146 0.26 -0.7 158,647 + Psyr_0146 0.26 -0.2 158,647 + Psyr_0146 0.26 +0.3 158,647 + Psyr_0146 0.26 +0.3 158,647 + Psyr_0146 0.26 +0.1 158,648 - Psyr_0146 0.26 +0.3 158,648 - Psyr_0146 0.26 -0.4 158,648 - Psyr_0146 0.26 -0.1 158,648 - Psyr_0146 0.26 -0.1 158,648 - Psyr_0146 0.26 -1.8 158,648 - Psyr_0146 0.26 -1.2 158,648 - Psyr_0146 0.26 -1.2 158,648 - Psyr_0146 0.26 -2.1 158,648 - Psyr_0146 0.26 +1.9 158,648 - Psyr_0146 0.26 +0.1 158,843 + Psyr_0146 0.41 +0.3 158,843 + Psyr_0146 0.41 +0.1 158,844 - Psyr_0146 0.41 +0.5 158,850 - Psyr_0146 0.42 +0.2 159,068 - Psyr_0146 0.59 +0.2 159,128 - Psyr_0146 0.63 +1.2 159,128 - Psyr_0146 0.63 +0.3 159,167 + Psyr_0146 0.66 +1.0
Or see this region's nucleotide sequence