Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0064 and Psyr_0065 are separated by 134 nucleotides Psyr_0065 and Psyr_0066 are separated by 405 nucleotides
Psyr_0064: Psyr_0064 - Sensory transduction protein kinase AlgZ, at 63,388 to 64,470
_0064
Psyr_0065: Psyr_0065 - argininosuccinate lyase, at 64,605 to 65,999
_0065
Psyr_0066: Psyr_0066 - bifunctional spore maturation protein, fused SpmA/SpmB, at 66,405 to 67,646
_0066
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.629 kb on - strand, within Psyr_0064 at 63.629 kb on - strand, within Psyr_0064 at 63.663 kb on - strand, within Psyr_0064 at 63.663 kb on - strand, within Psyr_0064 at 63.682 kb on + strand, within Psyr_0064 at 63.682 kb on + strand, within Psyr_0064 at 63.683 kb on - strand, within Psyr_0064 at 63.752 kb on - strand, within Psyr_0064 at 63.784 kb on + strand, within Psyr_0064 at 63.785 kb on - strand, within Psyr_0064 at 63.788 kb on + strand, within Psyr_0064 at 63.788 kb on + strand, within Psyr_0064 at 63.789 kb on - strand, within Psyr_0064 at 63.789 kb on - strand, within Psyr_0064 at 64.031 kb on + strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.037 kb on + strand, within Psyr_0064 at 64.037 kb on + strand, within Psyr_0064 at 64.088 kb on + strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064 at 64.518 kb on + strand at 64.518 kb on + strand at 64.519 kb on - strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.522 kb on + strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.523 kb on - strand at 64.538 kb on + strand at 64.538 kb on + strand at 66.043 kb on + strand at 66.143 kb on + strand at 66.315 kb on + strand at 66.315 kb on + strand at 66.315 kb on + strand at 66.316 kb on - strand at 66.316 kb on - strand at 66.316 kb on - strand at 66.324 kb on + strand at 66.324 kb on + strand at 66.324 kb on + strand at 66.325 kb on - strand at 66.325 kb on - strand at 66.325 kb on - strand at 66.399 kb on + strand at 66.400 kb on - strand at 66.512 kb on + strand at 66.513 kb on - strand at 66.513 kb on - strand at 66.513 kb on - strand at 66.513 kb on - strand at 66.574 kb on + strand, within Psyr_0066 at 66.574 kb on + strand, within Psyr_0066 at 66.574 kb on + strand, within Psyr_0066 at 66.883 kb on - strand, within Psyr_0066 at 66.883 kb on - strand, within Psyr_0066 at 66.883 kb on - strand, within Psyr_0066 at 66.919 kb on + strand, within Psyr_0066 at 66.920 kb on - strand, within Psyr_0066 at 66.920 kb on - strand, within Psyr_0066
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 63,611 + Psyr_0064 0.21 +0.3 63,611 + Psyr_0064 0.21 +0.4 63,611 + Psyr_0064 0.21 -2.1 63,611 + Psyr_0064 0.21 +0.8 63,611 + Psyr_0064 0.21 +0.8 63,611 + Psyr_0064 0.21 -0.7 63,611 + Psyr_0064 0.21 +0.7 63,611 + Psyr_0064 0.21 +0.5 63,611 + Psyr_0064 0.21 +0.1 63,611 + Psyr_0064 0.21 -0.6 63,612 - Psyr_0064 0.21 -0.1 63,612 - Psyr_0064 0.21 -0.0 63,612 - Psyr_0064 0.21 -1.0 63,612 - Psyr_0064 0.21 -0.2 63,612 - Psyr_0064 0.21 +0.7 63,612 - Psyr_0064 0.21 +1.7 63,612 - Psyr_0064 0.21 -1.7 63,612 - Psyr_0064 0.21 -1.3 63,612 - Psyr_0064 0.21 -0.5 63,612 - Psyr_0064 0.21 -1.6 63,612 - Psyr_0064 0.21 +1.0 63,628 + Psyr_0064 0.22 +1.1 63,628 + Psyr_0064 0.22 -1.0 63,628 + Psyr_0064 0.22 -0.8 63,628 + Psyr_0064 0.22 +0.7 63,629 - Psyr_0064 0.22 -0.7 63,629 - Psyr_0064 0.22 -2.0 63,663 - Psyr_0064 0.25 -0.1 63,663 - Psyr_0064 0.25 -1.8 63,682 + Psyr_0064 0.27 -1.6 63,682 + Psyr_0064 0.27 +1.1 63,683 - Psyr_0064 0.27 -0.1 63,752 - Psyr_0064 0.34 -0.4 63,784 + Psyr_0064 0.37 -3.1 63,785 - Psyr_0064 0.37 +0.0 63,788 + Psyr_0064 0.37 -1.6 63,788 + Psyr_0064 0.37 +1.4 63,789 - Psyr_0064 0.37 -1.0 63,789 - Psyr_0064 0.37 -0.4 64,031 + Psyr_0064 0.59 -1.2 64,032 - Psyr_0064 0.59 +0.1 64,032 - Psyr_0064 0.59 +0.3 64,032 - Psyr_0064 0.59 -0.3 64,037 + Psyr_0064 0.60 +0.8 64,037 + Psyr_0064 0.60 +0.8 64,088 + Psyr_0064 0.65 -0.1 64,089 - Psyr_0064 0.65 +2.2 64,089 - Psyr_0064 0.65 -0.4 64,089 - Psyr_0064 0.65 +0.8 64,518 + -1.8 64,518 + -2.4 64,519 - -0.5 64,522 + -0.7 64,522 + -0.5 64,522 + -0.5 64,522 + -0.7 64,522 + -0.1 64,522 + +0.1 64,522 + +0.3 64,522 + +0.8 64,522 + +3.1 64,522 + -0.4 64,522 + -1.6 64,522 + -1.3 64,522 + -2.0 64,522 + +0.4 64,522 + +0.2 64,522 + -0.2 64,522 + -0.7 64,523 - +0.3 64,523 - -2.9 64,523 - -0.5 64,523 - +0.8 64,523 - +1.4 64,523 - +1.0 64,523 - -0.2 64,523 - +0.9 64,523 - +0.9 64,523 - -0.7 64,523 - +0.6 64,523 - +0.6 64,523 - +0.6 64,523 - +0.3 64,523 - -0.5 64,523 - +2.7 64,523 - -1.5 64,523 - -0.8 64,523 - +1.9 64,538 + -0.4 64,538 + -0.8 66,043 + -0.3 66,143 + +0.7 66,315 + -0.2 66,315 + +0.2 66,315 + +1.3 66,316 - -0.3 66,316 - -3.5 66,316 - -0.3 66,324 + -1.2 66,324 + +1.5 66,324 + -1.8 66,325 - +0.1 66,325 - -0.2 66,325 - +0.1 66,399 + +0.6 66,400 - -0.5 66,512 + -0.0 66,513 - -0.7 66,513 - +0.6 66,513 - +0.2 66,513 - -0.3 66,574 + Psyr_0066 0.14 -1.0 66,574 + Psyr_0066 0.14 +0.1 66,574 + Psyr_0066 0.14 -0.6 66,883 - Psyr_0066 0.38 -2.0 66,883 - Psyr_0066 0.38 -0.5 66,883 - Psyr_0066 0.38 -0.7 66,919 + Psyr_0066 0.41 +1.2 66,920 - Psyr_0066 0.41 +0.1 66,920 - Psyr_0066 0.41 -0.5
Or see this region's nucleotide sequence