Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4403

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4402 and Echvi_4403 are separated by 250 nucleotidesEchvi_4403 and Echvi_4404 are separated by 141 nucleotides Echvi_4402: Echvi_4402 - Periplasmic protein involved in polysaccharide export, at 5,262,592 to 5,265,177 _4402 Echvi_4403: Echvi_4403 - Predicted endonuclease containing a URI domain, at 5,265,428 to 5,265,733 _4403 Echvi_4404: Echvi_4404 - nucleotide sugar dehydrogenase, at 5,265,875 to 5,267,191 _4404 Position (kb) 5265 5266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5264.439 kb on - strand, within Echvi_4402at 5264.491 kb on - strand, within Echvi_4402at 5264.537 kb on - strand, within Echvi_4402at 5264.546 kb on + strand, within Echvi_4402at 5264.546 kb on + strand, within Echvi_4402at 5264.546 kb on + strand, within Echvi_4402at 5264.546 kb on + strand, within Echvi_4402at 5264.554 kb on - strand, within Echvi_4402at 5264.633 kb on + strand, within Echvi_4402at 5264.633 kb on + strand, within Echvi_4402at 5264.666 kb on + strand, within Echvi_4402at 5264.687 kb on + strand, within Echvi_4402at 5264.688 kb on - strand, within Echvi_4402at 5264.691 kb on + strandat 5264.821 kb on + strand, within Echvi_4402at 5264.851 kb on + strand, within Echvi_4402at 5264.852 kb on - strand, within Echvi_4402at 5264.852 kb on - strand, within Echvi_4402at 5264.886 kb on + strand, within Echvi_4402at 5264.887 kb on - strand, within Echvi_4402at 5264.889 kb on + strand, within Echvi_4402at 5264.895 kb on + strand, within Echvi_4402at 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.177 kb on + strandat 5265.178 kb on - strandat 5265.181 kb on + strandat 5265.181 kb on + strandat 5265.182 kb on - strandat 5265.182 kb on - strandat 5265.221 kb on + strandat 5265.222 kb on - strandat 5265.224 kb on + strandat 5265.224 kb on + strandat 5265.351 kb on + strandat 5265.374 kb on + strandat 5265.375 kb on - strandat 5265.375 kb on - strandat 5265.375 kb on - strandat 5265.424 kb on - strandat 5265.481 kb on + strand, within Echvi_4403at 5265.527 kb on + strand, within Echvi_4403at 5265.527 kb on + strand, within Echvi_4403at 5265.529 kb on + strand, within Echvi_4403at 5265.529 kb on + strand, within Echvi_4403at 5265.529 kb on + strand, within Echvi_4403at 5265.529 kb on + strand, within Echvi_4403at 5265.583 kb on - strand, within Echvi_4403at 5265.617 kb on - strand, within Echvi_4403at 5265.628 kb on - strand, within Echvi_4403at 5265.628 kb on - strand, within Echvi_4403at 5265.628 kb on - strand, within Echvi_4403at 5265.628 kb on - strand, within Echvi_4403at 5265.628 kb on - strand, within Echvi_4403at 5265.682 kb on + strand, within Echvi_4403at 5265.696 kb on + strand, within Echvi_4403at 5265.696 kb on + strand, within Echvi_4403at 5265.706 kb on - strandat 5265.709 kb on + strandat 5265.710 kb on - strandat 5265.710 kb on - strandat 5265.741 kb on - strandat 5265.747 kb on + strandat 5265.747 kb on + strandat 5265.751 kb on + strandat 5265.769 kb on + strandat 5265.786 kb on - strandat 5265.786 kb on - strandat 5265.873 kb on + strandat 5265.874 kb on - strandat 5265.876 kb on + strandat 5265.876 kb on + strandat 5265.877 kb on - strandat 5265.891 kb on + strandat 5265.919 kb on - strandat 5265.930 kb on + strandat 5265.930 kb on + strandat 5265.931 kb on - strandat 5265.931 kb on - strandat 5265.995 kb on + strandat 5266.056 kb on + strand, within Echvi_4404at 5266.057 kb on - strand, within Echvi_4404at 5266.057 kb on - strand, within Echvi_4404at 5266.057 kb on - strand, within Echvi_4404at 5266.067 kb on - strand, within Echvi_4404at 5266.071 kb on + strand, within Echvi_4404at 5266.072 kb on - strand, within Echvi_4404at 5266.072 kb on - strand, within Echvi_4404at 5266.072 kb on - strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.092 kb on + strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.093 kb on - strand, within Echvi_4404at 5266.094 kb on + strand, within Echvi_4404at 5266.094 kb on + strand, within Echvi_4404at 5266.094 kb on + strand, within Echvi_4404at 5266.095 kb on - strand, within Echvi_4404at 5266.095 kb on - strand, within Echvi_4404at 5266.129 kb on - strand, within Echvi_4404at 5266.158 kb on - strand, within Echvi_4404at 5266.172 kb on + strand, within Echvi_4404at 5266.173 kb on - strand, within Echvi_4404at 5266.173 kb on - strand, within Echvi_4404at 5266.204 kb on + strand, within Echvi_4404at 5266.289 kb on + strand, within Echvi_4404at 5266.289 kb on + strand, within Echvi_4404at 5266.342 kb on + strandat 5266.342 kb on + strand, within Echvi_4404at 5266.342 kb on + strand, within Echvi_4404at 5266.345 kb on - strand, within Echvi_4404at 5266.345 kb on - strand, within Echvi_4404at 5266.351 kb on - strand, within Echvi_4404at 5266.379 kb on + strand, within Echvi_4404at 5266.427 kb on - strand, within Echvi_4404at 5266.427 kb on - strand, within Echvi_4404at 5266.469 kb on + strand, within Echvi_4404at 5266.560 kb on + strand, within Echvi_4404at 5266.593 kb on + strand, within Echvi_4404at 5266.594 kb on - strand, within Echvi_4404at 5266.594 kb on - strand, within Echvi_4404at 5266.627 kb on + strand, within Echvi_4404at 5266.627 kb on + strand, within Echvi_4404at 5266.628 kb on - strand, within Echvi_4404at 5266.628 kb on - strand, within Echvi_4404at 5266.628 kb on - strand, within Echvi_4404at 5266.628 kb on - strand, within Echvi_4404at 5266.629 kb on + strand, within Echvi_4404at 5266.629 kb on + strand, within Echvi_4404at 5266.629 kb on + strand, within Echvi_4404at 5266.629 kb on + strand, within Echvi_4404at 5266.630 kb on - strand, within Echvi_4404at 5266.630 kb on - strand, within Echvi_4404at 5266.631 kb on + strand, within Echvi_4404at 5266.631 kb on + strand, within Echvi_4404at 5266.631 kb on + strand, within Echvi_4404at 5266.632 kb on - strand, within Echvi_4404at 5266.632 kb on - strand, within Echvi_4404at 5266.727 kb on + strand, within Echvi_4404

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,264,439 - Echvi_4402 0.71 -3.8
5,264,491 - Echvi_4402 0.73 -1.9
5,264,537 - Echvi_4402 0.75 -0.5
5,264,546 + Echvi_4402 0.76 -3.7
5,264,546 + Echvi_4402 0.76 -4.0
5,264,546 + Echvi_4402 0.76 -2.2
5,264,546 + Echvi_4402 0.76 -1.9
5,264,554 - Echvi_4402 0.76 +1.4
5,264,633 + Echvi_4402 0.79 -2.0
5,264,633 + Echvi_4402 0.79 -1.7
5,264,666 + Echvi_4402 0.80 -2.9
5,264,687 + Echvi_4402 0.81 -3.0
5,264,688 - Echvi_4402 0.81 -3.0
5,264,691 + -1.0
5,264,821 + Echvi_4402 0.86 -2.8
5,264,851 + Echvi_4402 0.87 -3.6
5,264,852 - Echvi_4402 0.87 -1.8
5,264,852 - Echvi_4402 0.87 -1.5
5,264,886 + Echvi_4402 0.89 +0.5
5,264,887 - Echvi_4402 0.89 +0.2
5,264,889 + Echvi_4402 0.89 -2.8
5,264,895 + Echvi_4402 0.89 -1.4
5,265,177 + -3.4
5,265,177 + +0.8
5,265,177 + -1.5
5,265,177 + -3.5
5,265,177 + -4.2
5,265,177 + -2.1
5,265,177 + -3.2
5,265,178 - -0.2
5,265,181 + -1.5
5,265,181 + -2.2
5,265,182 - -1.0
5,265,182 - +0.9
5,265,221 + -2.5
5,265,222 - +0.3
5,265,224 + -1.1
5,265,224 + -0.6
5,265,351 + -1.4
5,265,374 + +0.5
5,265,375 - -1.9
5,265,375 - -0.3
5,265,375 - -0.1
5,265,424 - -0.4
5,265,481 + Echvi_4403 0.17 -1.7
5,265,527 + Echvi_4403 0.32 -1.3
5,265,527 + Echvi_4403 0.32 -2.0
5,265,529 + Echvi_4403 0.33 -0.9
5,265,529 + Echvi_4403 0.33 -1.5
5,265,529 + Echvi_4403 0.33 -1.4
5,265,529 + Echvi_4403 0.33 -1.7
5,265,583 - Echvi_4403 0.51 +0.0
5,265,617 - Echvi_4403 0.62 +0.7
5,265,628 - Echvi_4403 0.65 +1.0
5,265,628 - Echvi_4403 0.65 +0.1
5,265,628 - Echvi_4403 0.65 +0.2
5,265,628 - Echvi_4403 0.65 +0.5
5,265,628 - Echvi_4403 0.65 -0.3
5,265,682 + Echvi_4403 0.83 +0.8
5,265,696 + Echvi_4403 0.88 -1.6
5,265,696 + Echvi_4403 0.88 -1.5
5,265,706 - -0.2
5,265,709 + -2.4
5,265,710 - -0.9
5,265,710 - -0.6
5,265,741 - -1.4
5,265,747 + -1.4
5,265,747 + -0.5
5,265,751 + -0.8
5,265,769 + -1.1
5,265,786 - -0.9
5,265,786 - -0.5
5,265,873 + -3.0
5,265,874 - -0.1
5,265,876 + -1.7
5,265,876 + -0.5
5,265,877 - +0.5
5,265,891 + -1.3
5,265,919 - -0.3
5,265,930 + -1.0
5,265,930 + -1.3
5,265,931 - -0.0
5,265,931 - -0.5
5,265,995 + -0.7
5,266,056 + Echvi_4404 0.14 -2.3
5,266,057 - Echvi_4404 0.14 +0.0
5,266,057 - Echvi_4404 0.14 -1.0
5,266,057 - Echvi_4404 0.14 -0.9
5,266,067 - Echvi_4404 0.15 +0.8
5,266,071 + Echvi_4404 0.15 -1.5
5,266,072 - Echvi_4404 0.15 +0.0
5,266,072 - Echvi_4404 0.15 -0.4
5,266,072 - Echvi_4404 0.15 +0.8
5,266,092 + Echvi_4404 0.16 -1.1
5,266,092 + Echvi_4404 0.16 -1.5
5,266,092 + Echvi_4404 0.16 -2.1
5,266,092 + Echvi_4404 0.16 -2.1
5,266,092 + Echvi_4404 0.16 -0.1
5,266,092 + Echvi_4404 0.16 -1.9
5,266,092 + Echvi_4404 0.16 -1.7
5,266,092 + Echvi_4404 0.16 -0.8
5,266,093 - Echvi_4404 0.17 +0.2
5,266,093 - Echvi_4404 0.17 +0.2
5,266,093 - Echvi_4404 0.17 +0.1
5,266,093 - Echvi_4404 0.17 -0.4
5,266,093 - Echvi_4404 0.17 -0.5
5,266,093 - Echvi_4404 0.17 -1.6
5,266,093 - Echvi_4404 0.17 -0.2
5,266,094 + Echvi_4404 0.17 -1.0
5,266,094 + Echvi_4404 0.17 -1.4
5,266,094 + Echvi_4404 0.17 -1.1
5,266,095 - Echvi_4404 0.17 -0.3
5,266,095 - Echvi_4404 0.17 +0.2
5,266,129 - Echvi_4404 0.19 -0.2
5,266,158 - Echvi_4404 0.21 +0.9
5,266,172 + Echvi_4404 0.23 -1.7
5,266,173 - Echvi_4404 0.23 -0.7
5,266,173 - Echvi_4404 0.23 -0.3
5,266,204 + Echvi_4404 0.25 -2.0
5,266,289 + Echvi_4404 0.31 -0.8
5,266,289 + Echvi_4404 0.31 -0.9
5,266,342 + +1.2
5,266,342 + Echvi_4404 0.35 -0.4
5,266,342 + Echvi_4404 0.35 -2.1
5,266,345 - Echvi_4404 0.36 -0.7
5,266,345 - Echvi_4404 0.36 -0.0
5,266,351 - Echvi_4404 0.36 +1.8
5,266,379 + Echvi_4404 0.38 -1.0
5,266,427 - Echvi_4404 0.42 -0.9
5,266,427 - Echvi_4404 0.42 +1.2
5,266,469 + Echvi_4404 0.45 -0.8
5,266,560 + Echvi_4404 0.52 -1.1
5,266,593 + Echvi_4404 0.55 -1.9
5,266,594 - Echvi_4404 0.55 -0.1
5,266,594 - Echvi_4404 0.55 -0.0
5,266,627 + Echvi_4404 0.57 -0.5
5,266,627 + Echvi_4404 0.57 -1.0
5,266,628 - Echvi_4404 0.57 +0.0
5,266,628 - Echvi_4404 0.57 +1.0
5,266,628 - Echvi_4404 0.57 -2.1
5,266,628 - Echvi_4404 0.57 +0.5
5,266,629 + Echvi_4404 0.57 -1.3
5,266,629 + Echvi_4404 0.57 -0.8
5,266,629 + Echvi_4404 0.57 -3.1
5,266,629 + Echvi_4404 0.57 -2.2
5,266,630 - Echvi_4404 0.57 -1.8
5,266,630 - Echvi_4404 0.57 -0.5
5,266,631 + Echvi_4404 0.57 -1.6
5,266,631 + Echvi_4404 0.57 -1.0
5,266,631 + Echvi_4404 0.57 -0.9
5,266,632 - Echvi_4404 0.57 +1.0
5,266,632 - Echvi_4404 0.57 +1.4
5,266,727 + Echvi_4404 0.65 -2.1

Or see this region's nucleotide sequence