Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4790 and PP_4791 are separated by 354 nucleotides PP_4791 and PP_4792 are separated by 160 nucleotides
PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987
_4790
PP_4791: PP_4791 - transposase, at 5,453,342 to 5,454,670
_4791
PP_4792: PP_4792 - conserved exported protein of unknown function, at 5,454,831 to 5,455,592
_4792
Position (kb)
5453
5454
5455 Strain fitness (log2 ratio)
-2
-1
0
1 at 5452.969 kb on + strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5454.732 kb on + strand at 5454.805 kb on + strand at 5454.805 kb on + strand at 5454.806 kb on - strand at 5454.815 kb on + strand at 5454.815 kb on + strand at 5454.815 kb on + strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.820 kb on - strand at 5454.820 kb on - strand at 5454.820 kb on - strand at 5454.835 kb on + strand at 5455.471 kb on - strand, within PP_4792 at 5455.475 kb on + strand, within PP_4792 at 5455.475 kb on + strand, within PP_4792 at 5455.623 kb on + strand at 5455.623 kb on + strand at 5455.624 kb on - strand at 5455.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,452,969 + +0.9 5,453,009 - +0.4 5,453,009 - +0.1 5,453,009 - -0.7 5,453,009 - +0.5 5,454,732 + +0.0 5,454,805 + -0.3 5,454,805 + -0.0 5,454,806 - +1.3 5,454,815 + +0.3 5,454,815 + +0.8 5,454,815 + -1.7 5,454,816 - -0.2 5,454,816 - -0.3 5,454,816 - -0.8 5,454,816 - +0.3 5,454,816 - +1.2 5,454,816 - +0.5 5,454,816 - +0.2 5,454,816 - +1.6 5,454,816 - -0.2 5,454,820 - +0.2 5,454,820 - +0.7 5,454,820 - -1.0 5,454,835 + +0.6 5,455,471 - PP_4792 0.84 -1.1 5,455,475 + PP_4792 0.85 -2.4 5,455,475 + PP_4792 0.85 -1.3 5,455,623 + -0.1 5,455,623 + -0.4 5,455,624 - -0.3 5,455,624 - +0.0
Or see this region's nucleotide sequence